chr pos id ref alt mat pat unphased ref alt tot chr1 6302510 rs6694955 T C FALSE TRUE FALSE 0 31 31 chr1 17019802 rs576320 A G TRUE FALSE FALSE 49 11 60 chr1 17019967 rs578005 G T TRUE FALSE FALSE 46 5 51 chr1 17188391 rs61768094 T C FALSE TRUE FALSE 0 23 23 chr1 33168464 rs186609853 C G FALSE TRUE FALSE 37 0 38 chr1 39269931 rs186256726 T G TRUE FALSE FALSE 26 0 26 chr1 47691061 rs138622243 G T FALSE TRUE FALSE 26 0 32 chr1 47698135 rs189938609 T A FALSE TRUE FALSE 44 0 45 chr1 76081844 rs143714014 C A FALSE TRUE FALSE 22 0 22 chr1 86044028 rs116261635 T C TRUE FALSE FALSE 0 55 55 chr1 93913679 rs189874416 G C FALSE TRUE FALSE 36 0 36 chr1 94713101 rs6690762 C A FALSE TRUE FALSE 22 0 22 chr1 117453655 rs187751105 A G FALSE TRUE FALSE 34 0 34 chr1 121137769 rs57715171 T C FALSE TRUE FALSE 40 0 40 chr1 121137911 rs188372552 G C FALSE TRUE FALSE 45 0 45 chr1 121137928 rs28375344 T C FALSE TRUE FALSE 37 0 37 chr1 146549478 rs492243 G A FALSE TRUE FALSE 1 27 28 chr1 146549635 rs661116 A T FALSE TRUE FALSE 0 23 23 chr1 147727851 rs2999692 C G TRUE FALSE FALSE 0 37 37 chr1 148854417 rs147788017 G A TRUE FALSE FALSE 61 1 62 chr1 149717647 rs4559549 A C FALSE TRUE FALSE 0 31 31 chr1 149718092 rs79330123 C T FALSE TRUE FALSE 0 30 30 chr1 149718653 rs6663075 C A FALSE TRUE FALSE 0 31 36 chr1 149719483 rs55920718 C T FALSE TRUE FALSE 6 49 55 chr1 149719899 rs6657036 G T FALSE TRUE FALSE 0 38 38 chr1 149719922 rs2457467 G A FALSE TRUE FALSE 0 34 34 chr1 166890517 chr1_166890517_166890518 G A FALSE TRUE FALSE 23 0 23 chr1 205012737 rs12067709 T C FALSE TRUE FALSE 23 0 23 chr2 8817175 rs113256915 G A TRUE FALSE FALSE 41 0 41 chr2 66670976 rs1401444 C A TRUE FALSE FALSE 22 0 22 chr2 85973618 rs10172667 G T TRUE FALSE FALSE 0 21 21 chr2 86564462 rs187407143 C G FALSE TRUE FALSE 45 0 45 chr2 87522540 rs113354879 C T TRUE FALSE FALSE 25 0 25 chr2 91670134 rs11690904 C T TRUE FALSE FALSE 8 44 53 chr2 91670972 rs149419363 C T TRUE FALSE FALSE 26 0 28 chr2 91777042 rs6732809 G C FALSE TRUE FALSE 40 1 52 chr2 91777066 rs4005063 A G TRUE FALSE FALSE 1 40 52 chr2 101436912 rs143461691 G C FALSE TRUE FALSE 36 0 36 chr2 131594601 rs3102150 C G FALSE TRUE FALSE 0 21 21 chr2 132796065 rs188411373 G A TRUE FALSE FALSE 22 0 22 chr2 175199504 rs189678020 C T FALSE TRUE FALSE 21 0 21 chr2 175199678 rs115044618 G C FALSE TRUE FALSE 47 0 47 chr2 197457563 rs12471480 A G TRUE FALSE FALSE 0 27 35 chr2 201172141 rs147678253 G A FALSE TRUE FALSE 24 0 24 chr2 222435048 rs2710504 A G TRUE FALSE FALSE 0 46 46 chr2 235861082 rs187788899 C G FALSE TRUE FALSE 26 0 26 chr2 239122569 rs7589725 C T TRUE FALSE FALSE 21 0 21 chr3 39851089 rs186375620 T G FALSE TRUE FALSE 23 0 23 chr3 45267310 rs41118 C T FALSE TRUE FALSE 0 44 44 chr3 58572295 rs10866021 A G TRUE FALSE FALSE 0 42 42 chr3 59382989 rs150567663 A G TRUE FALSE FALSE 24 0 24 chr3 62860603 rs185795874 A G TRUE FALSE FALSE 21 0 21 chr3 75707390 rs114328301 T C FALSE TRUE FALSE 22 0 22 chr3 157823607 rs146151769 G T FALSE TRUE FALSE 31 0 31 chr3 170362245 rs114719853 G T FALSE TRUE FALSE 21 0 21 chr3 183301774 rs9824873 T C TRUE FALSE FALSE 21 0 21 chr3 192126446 rs75224764 G A FALSE TRUE FALSE 29 0 29 chr4 3486511 rs3827767 C T FALSE TRUE FALSE 22 0 22 chr4 6660615 rs186227815 T G TRUE FALSE FALSE 23 0 23 chr4 7194875 rs75820569 G A TRUE FALSE FALSE 24 0 24 chr4 24914611 rs75351733 G A FALSE TRUE FALSE 23 0 23 chr4 41931060 rs148543068 C T TRUE FALSE FALSE 21 0 21 chr4 85414433 rs111907596 C G TRUE FALSE FALSE 22 0 22 chr4 152330469 rs62327201 C T TRUE FALSE FALSE 39 0 42 chr5 6450203 rs169250 C A TRUE FALSE FALSE 0 22 23 chr5 32510288 rs79177551 A G FALSE TRUE FALSE 0 22 22 chr5 60628414 rs111274143 G T TRUE FALSE FALSE 25 0 27 chr5 78409396 rs542852 T C TRUE FALSE FALSE 0 22 22 chr5 78409533 rs649514 T C TRUE FALSE FALSE 0 25 25 chr5 141063476 rs116145764 A G TRUE FALSE FALSE 24 0 24 chr5 167955708 rs181747063 C T FALSE TRUE FALSE 21 0 21 chr6 3752124 rs145809697 C A FALSE TRUE FALSE 27 0 27 chr6 3752133 rs181236704 C T FALSE TRUE FALSE 25 0 25 chr6 13190599 rs145644523 T G FALSE TRUE FALSE 24 0 24 chr6 18357295 rs2209251 C T TRUE FALSE FALSE 0 23 23 chr6 44528841 rs73734116 A C TRUE FALSE FALSE 27 0 27 chr6 50811241 rs2982621 T A TRUE FALSE FALSE 0 23 23 chr6 90122357 rs1747503 G C TRUE FALSE FALSE 27 0 27 chr6 90122358 rs1747504 T C TRUE FALSE FALSE 25 0 25 chr6 99282288 rs195861 G A TRUE FALSE FALSE 47 0 47 chr6 105584686 rs140584113 G A TRUE FALSE FALSE 53 0 53 chr6 144328968 rs2281476 T C FALSE TRUE FALSE 0 21 21 chr7 5464100 rs187654162 T G TRUE FALSE FALSE 36 0 36 chr7 22539581 rs6461649 C G TRUE FALSE FALSE 0 30 30 chr7 24315081 rs6947301 T C FALSE TRUE FALSE 0 24 24 chr7 64974142 rs140909952 G A FALSE TRUE FALSE 29 0 29 chr7 64974146 rs150224290 G C FALSE TRUE FALSE 28 0 28 chr7 65112505 rs149949566 C T FALSE TRUE FALSE 0 44 44 chr7 96632015 rs143788731 C T FALSE TRUE FALSE 31 0 31 chr7 130132826 rs2301335 G A TRUE FALSE FALSE 0 31 31 chr7 139930471 rs77113328 G A FALSE TRUE FALSE 58 0 59 chr7 140776682 rs189888189 C T TRUE FALSE FALSE 22 0 24 chr7 149744673 rs6947009 T C FALSE TRUE FALSE 21 0 21 chr7 149746031 rs112259182 G A TRUE FALSE FALSE 27 0 27 chr7 149746043 rs142362370 G T TRUE FALSE FALSE 26 0 26 chr8 25905786 rs75312465 C A TRUE FALSE FALSE 34 0 34 chr8 41625184 rs151241950 C A TRUE FALSE FALSE 34 0 34 chr8 74283000 rs11785540 G A TRUE FALSE FALSE 28 0 28 chr8 107283955 rs190815308 A G TRUE FALSE FALSE 39 0 40 chr8 124553654 rs28699074 G A FALSE TRUE FALSE 0 24 24 chr8 145556511 rs77437860 G A FALSE TRUE FALSE 0 42 42 chr9 114656 rs1630667 A G FALSE TRUE FALSE 48 9 63 chr9 118418 rs4146164 T C TRUE FALSE FALSE 0 23 23 chr9 118535 rs7036059 T C FALSE TRUE FALSE 28 0 28 chr9 504886 rs35414372 C T FALSE TRUE FALSE 46 0 46 chr9 34522959 rs187508239 G C TRUE FALSE FALSE 25 0 25 chr9 66519748 rs11262369 G T FALSE TRUE FALSE 52 7 59 chr9 69785449 rs183323826 G A TRUE FALSE FALSE 21 0 23 chr9 92218709 rs1329732 G C FALSE TRUE FALSE 0 40 40 chr9 99984019 rs183530217 G A TRUE FALSE FALSE 35 0 35 chr9 117267942 rs10817631 G T TRUE FALSE FALSE 0 26 26 chr9 129375631 rs186248420 C G FALSE TRUE FALSE 51 0 51 chr9 132099391 rs2026995 T C FALSE TRUE FALSE 0 30 30 chr9 132199463 rs76158615 G A FALSE TRUE FALSE 25 0 25 chr9 132199471 rs76594965 G T FALSE TRUE FALSE 23 0 23 chr9 132199774 rs79684399 T A FALSE TRUE FALSE 29 0 29 chr9 132199810 rs79870272 G T FALSE TRUE FALSE 25 0 25 chr9 132199818 rs78169623 C T FALSE TRUE FALSE 22 0 22 chr9 133319879 rs188931514 A T TRUE FALSE FALSE 26 0 26 chr9 135463536 rs149879118 C T TRUE FALSE FALSE 28 0 28 chr9 140065043 rs28705343 G C TRUE FALSE FALSE 21 0 21 chr10 52833863 rs78357824 A G TRUE FALSE FALSE 28 0 31 chr10 93551904 rs143762694 G A TRUE FALSE FALSE 31 0 31 chr10 102895457 rs11190842 C A FALSE TRUE FALSE 26 0 26 chr10 116165759 rs7902928 C T TRUE FALSE FALSE 0 25 25 chr10 125751218 rs184739401 G A TRUE FALSE FALSE 21 0 27 chr10 125751245 rs79581887 C T TRUE FALSE FALSE 21 0 21 chr11 64480926 rs12293481 C T TRUE FALSE FALSE 28 0 28 chr11 66335913 rs117792851 C A FALSE TRUE FALSE 21 0 26 chr11 67722542 rs12362945 C T TRUE FALSE FALSE 26 0 26 chr11 76355285 rs4945094 G A FALSE TRUE FALSE 0 31 31 chr11 86666906 rs3758658 T C FALSE TRUE FALSE 0 37 37 chr11 121089364 rs79751425 G A FALSE TRUE FALSE 22 0 22 chr11 134146200 rs191043944 A G TRUE FALSE FALSE 23 0 30 chr12 5019800 rs187971825 T G FALSE TRUE FALSE 36 0 36 chr12 8542147 rs12366654 G C FALSE TRUE FALSE 0 26 26 chr12 9216035 rs192966521 C T FALSE TRUE FALSE 24 0 24 chr12 26111780 rs706520 C A TRUE FALSE FALSE 33 0 33 chr12 31272122 rs4931436 G A FALSE TRUE FALSE 0 28 28 chr12 54500812 rs76672080 G A FALSE TRUE FALSE 37 0 37 chr12 54500825 rs11170812 A G TRUE FALSE FALSE 0 28 28 chr12 54501012 rs60182793 G C TRUE FALSE FALSE 0 33 33 chr12 93965385 rs10745656 A G TRUE FALSE FALSE 0 27 27 chr12 122688780 rs879132 T C TRUE FALSE FALSE 48 0 48 chr13 35516649 rs189739678 G A TRUE FALSE FALSE 21 0 22 chr13 53421473 rs9596693 T C FALSE TRUE FALSE 22 0 23 chr13 102069075 rs9518395 A C FALSE TRUE FALSE 0 33 33 chr13 113548903 rs190903195 G T TRUE FALSE FALSE 29 0 29 chr13 114566275 rs193045500 A T TRUE FALSE FALSE 29 0 32 chr14 57274774 rs12878110 C T FALSE TRUE FALSE 29 0 36 chr14 61106019 rs2057136 T A FALSE TRUE FALSE 2 30 33 chr14 74102155 rs7160816 A T TRUE FALSE FALSE 0 21 21 chr14 77966031 rs117524721 C A TRUE FALSE FALSE 32 0 32 chr14 89021429 rs113775011 C G TRUE FALSE FALSE 39 0 39 chr14 94641183 rs188996857 C T TRUE FALSE FALSE 51 0 51 chr14 103388999 rs2295828 T C TRUE FALSE FALSE 0 48 50 chr15 51640359 rs2445771 A G TRUE FALSE FALSE 21 0 21 chr15 57884181 rs1690328 T C FALSE TRUE FALSE 0 37 37 chr15 81071655 rs2759313 T G FALSE TRUE FALSE 0 24 24 chr16 10276842 rs189611728 C T FALSE TRUE FALSE 22 0 26 chr16 32127582 rs188004943 C T FALSE TRUE FALSE 22 0 28 chr16 54319994 rs1868691 G C TRUE FALSE FALSE 0 29 29 chr16 71069882 rs886515 G A FALSE TRUE FALSE 0 29 29 chr16 85203455 rs150263615 G A FALSE TRUE FALSE 28 0 28 chr16 89267480 rs58816968 C G FALSE TRUE FALSE 52 0 52 chr17 10101952 rs187919709 T G FALSE TRUE FALSE 28 0 28 chr17 32539276 rs186600824 A C FALSE TRUE FALSE 26 0 26 chr17 37763929 rs116950586 G A FALSE TRUE FALSE 43 0 43 chr17 41984236 rs114708456 C A FALSE TRUE FALSE 45 0 45 chr17 44311981 rs117510208 C A FALSE TRUE FALSE 24 0 24 chr17 44339513 rs117671617 A C FALSE TRUE FALSE 36 1 38 chr17 44345434 rs113748556 A G FALSE TRUE FALSE 42 4 48 chr17 72919900 rs116106925 G A FALSE TRUE FALSE 34 0 34 chr17 75524926 rs35620944 G T TRUE FALSE FALSE 22 0 22 chr17 77787033 rs111359237 C G TRUE FALSE FALSE 42 0 42 chr17 79918833 rs185864818 G A TRUE FALSE FALSE 44 0 45 chr18 3450932 rs238534 C T FALSE TRUE FALSE 41 0 41 chr18 21242304 rs1613739 C G FALSE TRUE FALSE 0 48 48 chr18 21852043 rs149666213 A G TRUE FALSE FALSE 26 0 26 chr18 22929806 rs186373182 C T FALSE TRUE FALSE 0 37 37 chr18 31739744 rs191461222 G T FALSE TRUE FALSE 22 0 27 chr18 32073724 rs138706337 G A FALSE TRUE FALSE 27 0 27 chr18 56514160 rs112869723 C A FALSE TRUE FALSE 25 0 25 chr19 5338713 rs79622411 A C FALSE TRUE FALSE 21 0 21 chr19 5804982 rs190587670 G A FALSE TRUE FALSE 21 0 21 chr19 14317350 rs181861465 G T FALSE TRUE FALSE 27 0 27 chr19 19322751 rs139943885 C A FALSE TRUE FALSE 26 0 26 chr19 46477246 rs186471867 T G FALSE TRUE FALSE 28 0 28 chr19 47922426 rs62130535 G A FALSE TRUE FALSE 25 0 25 chr19 48216657 rs753269 C T FALSE TRUE FALSE 21 0 21 chr20 19983390 rs2235886 T C FALSE TRUE FALSE 30 0 30 chr20 44936704 rs146205835 C T FALSE TRUE FALSE 52 0 52 chr20 48184857 rs566508 C G TRUE FALSE FALSE 0 27 27 chr20 48184872 rs566466 T G TRUE FALSE FALSE 0 29 29 chr22 36426227 rs189034808 C A FALSE TRUE FALSE 32 0 32 chr22 37915542 rs141290713 T C FALSE TRUE FALSE 29 0 29 chr22 39640744 rs142404523 A G TRUE FALSE FALSE 25 0 35 chr22 41475421 rs189719989 C T TRUE FALSE FALSE 22 0 22 chr22 51038241 rs9628223 A G TRUE FALSE FALSE 43 0 43