chr pos id ref alt mat pat unphased ref alt tot chr1 762601 rs71507463 T C TRUE FALSE FALSE 6 41 47 chr1 762632 rs61768173 T A TRUE FALSE FALSE 12 50 62 chr1 1446922 rs183574713 C T FALSE TRUE FALSE 38 0 38 chr1 6640116 rs17029626 A G FALSE TRUE FALSE 0 105 105 chr1 16011026 rs182697075 T G TRUE FALSE FALSE 28 0 28 chr1 16174543 rs191438797 T G FALSE TRUE FALSE 36 0 36 chr1 16563563 rs56329264 C G FALSE TRUE FALSE 47 0 58 chr1 26799334 rs183964914 C G TRUE FALSE FALSE 51 0 51 chr1 28216736 rs9701457 C T TRUE FALSE FALSE 27 0 32 chr1 28840501 rs11807178 C T FALSE TRUE FALSE 1 88 89 chr1 36866879 rs6696368 T C TRUE FALSE FALSE 1 58 59 chr1 40974428 rs57716074 G C FALSE TRUE FALSE 81 0 82 chr1 108743140 rs577690 C G TRUE FALSE FALSE 30 1 31 chr1 144534025 rs12407184 G A FALSE TRUE FALSE 335 0 337 chr1 146556212 rs76638383 G A TRUE FALSE FALSE 48 193 241 chr1 148241360 rs75096758 C T FALSE TRUE FALSE 136 1 137 chr1 149514037 rs145238563 A C TRUE FALSE FALSE 0 50 50 chr1 149514093 rs75556139 A G TRUE FALSE FALSE 0 81 81 chr1 149514149 rs80041233 G A TRUE FALSE FALSE 0 64 64 chr1 149514179 rs76490928 C T TRUE FALSE FALSE 0 39 39 chr1 149605791 rs143491282 C A TRUE FALSE FALSE 2 210 213 chr1 154581136 rs187025149 C G TRUE FALSE FALSE 23 0 31 chr1 226309940 rs185276885 A G TRUE FALSE FALSE 29 0 29 chr1 244488432 rs12026166 G C FALSE TRUE FALSE 1 28 29 chr2 38060912 rs12712556 C T TRUE FALSE FALSE 21 0 21 chr2 64371297 rs36107593 G C FALSE TRUE FALSE 66 0 66 chr2 86423019 rs4422155 C T TRUE FALSE FALSE 55 11 66 chr2 86423031 rs4450596 A C TRUE FALSE FALSE 47 10 57 chr2 129076387 rs4274545 C A TRUE FALSE FALSE 52 0 78 chr2 129076396 rs3991330 C G FALSE TRUE FALSE 0 49 76 chr2 132285256 rs1812765 T C TRUE FALSE FALSE 0 34 34 chr2 132440073 rs6720375 G C TRUE FALSE FALSE 8 48 56 chr2 162101549 rs186580688 G A TRUE FALSE FALSE 26 0 28 chr2 179315726 rs62176112 G A TRUE FALSE FALSE 74 0 145 chr2 181845428 rs191441558 C T FALSE TRUE FALSE 26 0 26 chr2 230786689 rs113340201 G C FALSE TRUE FALSE 33 0 33 chr2 232063277 rs138932429 C T TRUE FALSE FALSE 53 0 53 chr2 234777040 rs13003628 G A FALSE TRUE FALSE 1 41 42 chr2 239112418 rs6746093 G T FALSE TRUE FALSE 87 0 87 chr3 14258107 rs9869943 T C FALSE TRUE FALSE 0 40 40 chr3 57678638 chr3_57678638_57678639 T C TRUE FALSE FALSE 96 2 98 chr3 69129491 rs185058809 T C TRUE FALSE FALSE 51 1 52 chr3 75834423 rs4974333 C T FALSE TRUE FALSE 0 22 22 chr3 178866408 rs2699887 C T TRUE FALSE FALSE 22 0 22 chr4 8160921 rs61357786 C G TRUE FALSE FALSE 58 0 58 chr4 25312242 rs1533131 G A FALSE TRUE FALSE 22 0 22 chr4 39979484 rs537353 G C TRUE FALSE FALSE 0 65 65 chr4 89618837 rs710834 T C FALSE TRUE FALSE 21 0 21 chr4 140005625 rs190555258 T G FALSE TRUE FALSE 26 0 27 chr4 174089947 rs188474717 C G FALSE TRUE FALSE 33 0 33 chr4 174430825 rs13113763 C G FALSE TRUE FALSE 0 30 31 chr4 174430843 rs13112214 G A FALSE TRUE FALSE 0 27 28 chr5 1494909 rs3733796 C T TRUE FALSE FALSE 1 25 26 chr5 5038123 rs172067 T C TRUE FALSE FALSE 26 1 27 chr5 5039462 rs2561736 A G TRUE FALSE FALSE 24 0 24 chr5 5039629 rs395890 G C TRUE FALSE FALSE 26 1 27 chr5 5039990 rs454810 G T TRUE FALSE FALSE 43 1 44 chr5 40832083 rs140677436 G A TRUE FALSE FALSE 37 0 37 chr5 56111481 rs185050655 C T TRUE FALSE FALSE 35 0 37 chr5 61602038 rs181824384 A C TRUE FALSE FALSE 41 1 42 chr5 78280593 rs163128 C T FALSE TRUE FALSE 73 0 73 chr5 133801837 rs75198535 A G TRUE FALSE FALSE 71 0 71 chr5 170837900 rs117701982 A G TRUE FALSE FALSE 26 0 26 chr5 171710717 rs78101663 C T TRUE FALSE FALSE 34 0 34 chr6 1555379 rs9391924 T C TRUE FALSE FALSE 25 0 25 chr6 26924050 rs62402025 G A FALSE TRUE FALSE 2 37 39 chr6 31324104 rs139086468 G A TRUE FALSE FALSE 28 1 32 chr6 31588686 rs149053825 T C FALSE TRUE FALSE 12 59 71 chr6 31588707 rs193025229 C T TRUE FALSE FALSE 62 6 69 chr6 33176192 rs143599611 T G FALSE TRUE FALSE 96 0 96 chr6 37484698 rs1776456 C G FALSE TRUE FALSE 43 8 52 chr6 37484715 rs914349 A C FALSE TRUE FALSE 41 5 47 chr6 37484729 rs914348 G A FALSE TRUE FALSE 41 4 45 chr6 45345248 rs3749863 A C FALSE TRUE FALSE 0 28 28 chr6 86353523 rs12525370 G A TRUE FALSE FALSE 76 0 76 chr6 109777049 rs138850563 C T TRUE FALSE FALSE 28 0 32 chr6 117002277 rs9489008 G T FALSE TRUE FALSE 39 5 47 chr6 153304040 rs188203987 C G FALSE TRUE FALSE 59 0 59 chr6 155635595 chr6_155635595_155635596 A C FALSE TRUE FALSE 86 0 86 chr6 160148410 rs111664512 G A FALSE TRUE FALSE 82 29 111 chr7 856463 rs192989453 C G FALSE TRUE FALSE 29 0 29 chr7 12596096 rs6961909 C A FALSE TRUE FALSE 31 0 31 chr7 17338287 rs191178793 A G FALSE TRUE FALSE 53 0 53 chr7 64541681 rs4302728 G T FALSE TRUE FALSE 47 0 47 chr7 100472380 rs12705091 C T TRUE FALSE FALSE 62 15 77 chr7 102119322 rs1131325 T C TRUE FALSE FALSE 0 62 68 chr7 104581402 rs2470938 C A TRUE FALSE FALSE 0 61 61 chr7 104581510 rs2470939 G A TRUE FALSE FALSE 0 44 44 chr7 148581849 rs141333506 T G FALSE TRUE FALSE 0 59 59 chr7 155089344 rs75753237 T C TRUE FALSE FALSE 0 67 67 chr7 156931457 rs139724025 G T TRUE FALSE FALSE 24 0 29 chr8 2075378 rs4876220 C T TRUE FALSE FALSE 29 0 29 chr8 2075830 rs35670997 G C TRUE FALSE FALSE 22 0 22 chr8 8086423 rs7826465 G A TRUE FALSE FALSE 43 5 49 chr8 12809126 rs59255075 C T TRUE FALSE FALSE 1 25 26 chr8 33371479 rs2083493 G C FALSE TRUE FALSE 0 56 57 chr8 57124210 rs185937817 A C FALSE TRUE FALSE 72 0 72 chr8 62627510 rs4272369 C G FALSE TRUE FALSE 39 4 43 chr8 72916721 rs1481849 G C TRUE FALSE FALSE 24 0 26 chr8 74659022 rs190921391 T C TRUE FALSE FALSE 47 0 48 chr8 103668264 rs2734824 G A FALSE TRUE FALSE 0 21 33 chr8 143808463 rs187474668 A G TRUE FALSE FALSE 39 0 39 chr9 6757998 rs117810624 C G TRUE FALSE FALSE 71 0 77 chr9 37027536 rs1329571 A T FALSE TRUE FALSE 40 0 40 chr9 45726784 rs75090750 A T TRUE FALSE FALSE 0 21 21 chr9 45726935 rs62556691 T C TRUE FALSE FALSE 0 23 23 chr9 97137530 rs9409530 A C FALSE TRUE FALSE 0 24 25 chr9 99212378 rs1885426 C T TRUE FALSE FALSE 21 0 21 chr9 102861613 rs7024375 T G TRUE FALSE FALSE 36 0 37 chr9 108006948 rs390529 T C TRUE FALSE FALSE 36 0 36 chr9 112811038 rs78923754 C T TRUE FALSE FALSE 5 50 55 chr9 114246004 rs145734823 G C FALSE TRUE FALSE 23 0 23 chr9 126760370 rs116444375 T G TRUE FALSE FALSE 1 27 28 chr9 139622450 rs2275158 G T TRUE FALSE FALSE 26 76 111 chr10 6131225 rs186705110 A G TRUE FALSE FALSE 47 0 47 chr10 25305991 rs7082131 C G FALSE TRUE FALSE 63 0 63 chr10 43879776 rs78490981 G A TRUE FALSE FALSE 24 0 39 chr10 52420020 rs17497903 G A TRUE FALSE FALSE 38 0 38 chr10 88149298 rs10887595 T C TRUE FALSE FALSE 27 0 27 chr10 105452074 rs192339714 C T TRUE FALSE FALSE 32 0 32 chr10 119134892 rs183125037 C G TRUE FALSE FALSE 79 0 79 chr10 123734823 rs146077630 G A FALSE TRUE FALSE 33 0 33 chr10 131265388 rs181536588 T A FALSE TRUE FALSE 30 0 30 chr11 3078885 rs384490 T G FALSE TRUE FALSE 2 28 30 chr11 33037317 rs113917313 G C FALSE TRUE FALSE 0 25 25 chr11 44117424 rs12365753 G A TRUE FALSE FALSE 34 0 34 chr11 66115264 rs11227464 G A TRUE FALSE FALSE 31 0 31 chr11 111280922 rs6589230 A G TRUE FALSE FALSE 13 57 70 chr11 111281066 rs2213027 G A FALSE TRUE FALSE 68 11 79 chr12 498737 rs9668495 C G TRUE FALSE FALSE 53 13 66 chr12 6553806 rs11569361 G A FALSE TRUE FALSE 42 0 42 chr12 8123306 rs7307261 G A FALSE TRUE FALSE 17 68 85 chr12 11700172 rs6488425 G T TRUE FALSE FALSE 28 0 28 chr12 39836937 rs111306046 C A TRUE FALSE FALSE 76 0 76 chr12 69213531 rs150753011 G A TRUE FALSE FALSE 30 0 30 chr12 105724475 rs139854423 C T TRUE FALSE FALSE 31 0 31 chr12 111126636 rs11829358 A G TRUE FALSE FALSE 22 0 22 chr12 122907209 rs188012955 C T TRUE FALSE FALSE 24 0 24 chr13 76056272 rs138065638 G A TRUE FALSE FALSE 26 1 27 chr14 22955685 rs128799 A G TRUE FALSE FALSE 21 0 21 chr14 56046837 rs187641359 G C FALSE TRUE FALSE 44 0 44 chr14 56047257 rs7142200 T C FALSE TRUE FALSE 25 0 25 chr14 64971749 rs9323451 G A TRUE FALSE FALSE 0 80 80 chr14 74252993 rs929450 A G FALSE TRUE FALSE 0 24 24 chr14 74253708 rs1558176 A G TRUE FALSE FALSE 33 0 33 chr14 100704890 rs113799953 T G TRUE FALSE FALSE 67 0 67 chr14 103589842 rs3759571 A G TRUE FALSE FALSE 0 36 36 chr14 104338467 rs147038423 G A TRUE FALSE FALSE 21 0 21 chr14 105780654 rs144325169 A G TRUE FALSE FALSE 21 0 21 chr14 106209538 rs28490894 G A TRUE FALSE FALSE 0 83 83 chr14 106209558 rs28478304 G C TRUE FALSE FALSE 0 94 95 chr14 106210807 rs4773955 T C FALSE TRUE FALSE 0 66 66 chr14 106210814 rs61983938 T C FALSE TRUE FALSE 0 66 66 chr14 106212026 rs186903250 C G FALSE TRUE FALSE 1 70 80 chr14 106238255 rs3020579 G C TRUE FALSE FALSE 0 25 25 chr14 106325303 rs139606931 C T TRUE FALSE FALSE 0 21 29 chr14 106326011 rs115497162 C G TRUE FALSE FALSE 0 32 32 chr14 106326733 rs980847 A G TRUE FALSE FALSE 153 13 186 chr14 106329287 rs13379369 G A TRUE FALSE FALSE 92 18 123 chr14 106329472 rs182768989 A G FALSE TRUE FALSE 53 0 65 chr14 106329778 rs115563556 T G FALSE TRUE FALSE 0 114 114 chr14 106330126 rs3752945 C A TRUE FALSE FALSE 26 0 43 chr15 52311811 rs187215270 G C FALSE TRUE FALSE 28 0 28 chr15 65592809 rs77009274 G A FALSE TRUE FALSE 89 1 90 chr15 65592899 rs112562366 C T FALSE TRUE FALSE 159 2 161 chr15 65592947 rs12906876 T A TRUE FALSE FALSE 2 171 173 chr15 85291826 rs185237768 G C TRUE FALSE FALSE 83 0 94 chr15 100105553 rs111999921 C A FALSE TRUE FALSE 26 0 30 chr15 101459722 rs112308181 C A TRUE FALSE FALSE 22 0 22 chr15 102192887 rs11633275 A G TRUE FALSE FALSE 64 0 87 chr16 4743254 rs146110733 G T TRUE FALSE FALSE 28 0 28 chr16 22203005 rs7203246 T A TRUE FALSE FALSE 1 35 36 chr16 50187421 rs8054285 G A TRUE FALSE FALSE 0 39 39 chr16 57025811 rs145670271 C T FALSE TRUE FALSE 54 3 57 chr16 68119302 rs191608823 T G FALSE TRUE FALSE 49 0 49 chr16 74402025 rs11648107 A T TRUE FALSE FALSE 148 46 211 chr17 5019668 rs6502844 C T FALSE TRUE FALSE 0 21 22 chr17 5019904 rs79194443 G A TRUE FALSE FALSE 41 0 41 chr17 18585658 rs111324021 C A TRUE FALSE FALSE 33 0 34 chr17 18761419 rs9905495 T C FALSE TRUE FALSE 48 11 59 chr17 33571309 rs57708672 G T TRUE FALSE FALSE 4 53 57 chr17 40610562 rs7224645 T A FALSE TRUE FALSE 0 39 40 chr17 44270722 rs181794122 T C TRUE FALSE FALSE 34 3 38 chr17 62915491 rs182961995 C G FALSE TRUE FALSE 91 19 110 chr17 62915493 rs188868787 C T FALSE TRUE FALSE 95 19 115 chr17 62915572 rs113172801 C T FALSE TRUE FALSE 132 28 160 chr17 73267432 rs145539737 C T TRUE FALSE FALSE 78 0 78 chr17 75137085 rs187975190 T G FALSE TRUE FALSE 41 0 41 chr17 77071167 rs182215016 A G TRUE FALSE FALSE 37 0 37 chr17 79455130 rs6565573 A G TRUE FALSE FALSE 31 3 34 chr17 80477649 rs8069333 C G FALSE TRUE FALSE 0 27 27 chr18 9137306 rs185200386 G A TRUE FALSE FALSE 42 0 42 chr18 45457818 rs11874858 A G TRUE FALSE FALSE 39 0 39 chr18 77160066 rs117314773 G A FALSE TRUE FALSE 0 21 21 chr18 77160067 rs138901831 G C FALSE TRUE FALSE 0 21 21 chr18 77748624 rs115904884 T C FALSE TRUE FALSE 102 0 133 chr19 4230109 rs7254021 T C FALSE TRUE FALSE 24 0 24 chr19 5828380 rs1531616 A G FALSE TRUE FALSE 11 65 76 chr19 12833223 rs8104141 T C TRUE FALSE FALSE 21 0 21 chr19 13053126 rs189809595 G A FALSE TRUE FALSE 21 0 21 chr19 18688985 rs4808821 C T TRUE FALSE FALSE 0 23 23 chr19 42747280 rs3810149 G C TRUE FALSE FALSE 23 0 23 chr19 42757439 rs181240568 G A TRUE FALSE FALSE 31 0 31 chr19 42788222 rs187522860 A G FALSE TRUE FALSE 30 0 31 chr19 49891280 rs7251212 A G TRUE FALSE FALSE 41 1 42 chr19 53360728 rs58361565 C G FALSE TRUE FALSE 65 0 104 chr19 53360861 rs11673701 A G FALSE TRUE FALSE 61 15 85 chr20 17949167 rs2273450 G A TRUE FALSE FALSE 61 0 61 chr21 44773517 rs7277352 G C FALSE TRUE FALSE 0 27 27 chr22 19109955 rs2283643 G A FALSE TRUE FALSE 41 0 41 chr22 23040318 rs12170914 C T FALSE TRUE FALSE 216 0 217 chr22 23040461 rs12166262 C A FALSE TRUE FALSE 282 0 285 chr22 23040462 rs1312 T C FALSE TRUE FALSE 278 1 281 chr22 23040487 rs12165881 G A FALSE TRUE FALSE 246 0 249 chr22 23040765 rs61732325 G T FALSE TRUE FALSE 24 0 25 chr22 23236620 rs78420353 A G FALSE TRUE FALSE 0 48 49 chr22 23236765 rs189091647 C G FALSE TRUE FALSE 1 123 125 chr22 23237118 rs183103773 C T FALSE TRUE FALSE 1 135 136 chr22 23238210 rs2066998 T C TRUE FALSE FALSE 0 114 114 chr22 23239280 rs405471 A G FALSE TRUE FALSE 23 0 23 chr22 31742287 rs184350357 C G FALSE TRUE FALSE 65 0 76 chr22 41488232 rs61342075 C T TRUE FALSE FALSE 34 0 34 chr22 41777387 rs184160819 T G FALSE TRUE FALSE 22 0 22 chr22 42229092 rs41277471 G C TRUE FALSE FALSE 0 42 42 chr22 43011674 rs137116 T C FALSE TRUE FALSE 150 17 168 chr22 50338212 rs28538803 A G TRUE FALSE FALSE 0 21 21 chr22 50338497 rs62234039 A G TRUE FALSE FALSE 0 36 36 chr22 50913429 rs4824154 T C TRUE FALSE FALSE 26 0 27 chrX 200327 rs186227789 C A FALSE TRUE FALSE 21 0 21 chrX 2847017 rs3747393 T C TRUE FALSE FALSE 25 0 25 chrX 2847133 rs3747394 A G TRUE FALSE FALSE 32 1 33 chrX 2847157 rs3747395 C G TRUE FALSE FALSE 28 1 29 chrX 15353483 rs45538433 G C FALSE TRUE FALSE 36 2 38 chrX 15511412 rs2271550 A C TRUE FALSE FALSE 0 32 32 chrX 23685661 chrX_23685661_23685662 G A TRUE FALSE FALSE 1 47 48 chrX 23761537 rs3764881 G T FALSE TRUE FALSE 25 1 26 chrX 23801593 rs3764885 A G FALSE TRUE FALSE 0 28 28 chrX 24261089 rs113551825 G A TRUE FALSE FALSE 38 3 41 chrX 24483405 rs7891330 T G FALSE TRUE FALSE 1 40 41 chrX 47341821 rs2071780 A G FALSE TRUE FALSE 2 37 39 chrX 48367540 rs12559784 C T TRUE FALSE FALSE 1 29 30 chrX 48433499 rs2249583 C G FALSE TRUE FALSE 29 1 30 chrX 48437902 rs7879764 A G TRUE FALSE FALSE 0 23 23 chrX 48438870 rs11795839 C T TRUE FALSE FALSE 0 27 27 chrX 48534811 rs235420 T C TRUE FALSE FALSE 1 36 37 chrX 48554637 rs3761543 G A TRUE FALSE FALSE 0 24 24 chrX 51486659 rs974285 C T FALSE TRUE FALSE 0 37 37 chrX 52005149 rs147671003 C T TRUE FALSE FALSE 46 3 49 chrX 53024622 rs41300638 G C TRUE FALSE FALSE 28 0 28 chrX 54665735 rs5960325 T C TRUE FALSE FALSE 30 0 30 chrX 54665950 rs4275347 A G TRUE FALSE FALSE 43 2 45 chrX 54666288 rs12389474 G C TRUE FALSE FALSE 31 0 31 chrX 55744285 rs5960093 C G TRUE FALSE FALSE 43 0 43 chrX 57147944 rs2071722 G T TRUE FALSE FALSE 45 1 46 chrX 67719085 rs12843249 G T FALSE TRUE FALSE 40 0 40 chrX 70338118 rs12840573 G A FALSE TRUE FALSE 0 40 40 chrX 70338399 rs11796153 A G FALSE TRUE FALSE 0 38 38 chrX 77359566 rs150921338 T A FALSE TRUE FALSE 32 0 32 chrX 100352870 rs7886970 A T TRUE FALSE FALSE 2 77 79 chrX 100641574 rs2071229 G A FALSE TRUE FALSE 21 0 21 chrX 100649408 rs112132208 A T FALSE TRUE FALSE 21 0 21 chrX 100651904 rs141500279 G A FALSE TRUE FALSE 33 1 34 chrX 103173633 rs151143781 A C FALSE TRUE FALSE 22 0 22 chrX 103401770 rs7882194 A C FALSE TRUE FALSE 53 1 54 chrX 118602222 rs62599439 G C TRUE FALSE FALSE 1 39 40 chrX 118602886 rs146446105 C G TRUE FALSE FALSE 0 41 41 chrX 123094802 rs34620385 A G FALSE TRUE FALSE 0 22 22 chrX 128915438 rs704869 A C FALSE TRUE FALSE 33 1 34 chrX 153665539 rs192115845 C G TRUE FALSE FALSE 35 0 35