chr pos id ref alt mat pat unphased ref alt tot chr1 22445744 rs72647406 C T FALSE TRUE TRUE 27 0 28 chr1 28837880 rs2853735 A G FALSE TRUE TRUE 404 260 693 chr2 25383068 rs28932474 G C FALSE TRUE FALSE 8 45 53 chr2 61703319 rs10206089 G A TRUE FALSE FALSE 129 10 140 chr2 89156124 rs232231 G C FALSE TRUE TRUE 202 629 831 chr2 89157282 rs232229 T A TRUE FALSE FALSE 274 93 367 chr2 89158971 rs232228 G A FALSE TRUE TRUE 48 171 310 chr2 89159113 rs72847505 C G TRUE FALSE FALSE 58 146 278 chr2 89159254 rs115496172 T C TRUE FALSE FALSE 71 201 292 chr2 89159558 rs72847509 T C TRUE FALSE FALSE 54 162 302 chr2 89159694 rs232225 T A FALSE TRUE TRUE 46 142 287 chr2 89161547 rs232222 A G TRUE FALSE FALSE 64 1 65 chr2 89161932 rs232221 C A TRUE FALSE FALSE 50 6 57 chr2 89163315 rs72847535 T G TRUE FALSE FALSE 3 64 67 chr2 89163765 rs116443209 T C TRUE FALSE FALSE 9 52 61 chr2 89163769 rs115554021 G C TRUE FALSE FALSE 9 51 60 chr2 89163792 rs72847537 A T TRUE FALSE FALSE 7 43 50 chr2 89164214 rs12996118 C T FALSE TRUE FALSE 58 3 61 chr2 89164295 rs72847538 A T TRUE FALSE FALSE 5 55 60 chr2 89164316 rs72847539 A T TRUE FALSE FALSE 4 49 53 chr2 89165189 rs232218 A C TRUE FALSE FALSE 1 47 48 chr2 89165310 rs72847541 C T TRUE FALSE FALSE 5 43 48 chr2 89185274 rs116639073 C T TRUE FALSE FALSE 28 177 205 chr2 89185298 rs115012529 T A TRUE FALSE FALSE 22 181 203 chr2 89185306 rs116145501 A C TRUE FALSE FALSE 22 167 189 chr2 89185406 rs72847567 T C TRUE FALSE FALSE 19 152 172 chr2 89185454 rs72847569 T C TRUE FALSE FALSE 18 128 146 chr2 89185478 rs7606636 T A TRUE FALSE FALSE 19 120 140 chr2 89185596 rs72847570 T A TRUE FALSE FALSE 26 90 124 chr2 136456319 rs7592990 G A FALSE TRUE FALSE 0 22 22 chr2 190631459 rs80277863 A C FALSE TRUE FALSE 0 24 24 chr3 185628723 rs115486847 G A TRUE FALSE FALSE 80 0 80 chr3 195774890 rs73208061 G A FALSE TRUE FALSE 68 14 87 chr3 195790022 rs499591 A T TRUE FALSE FALSE 0 24 26 chr5 32606253 rs818113 T C FALSE TRUE TRUE 8 46 55 chr5 178986632 rs7703730 C A TRUE FALSE FALSE 2 31 33 chr6 353788 rs4959750 C T FALSE TRUE TRUE 40 0 40 chr6 354101 rs4959752 G A FALSE TRUE TRUE 34 1 35 chr6 31812038 rs9267576 T G FALSE TRUE FALSE 4 41 45 chr6 32486248 rs111338793 C G TRUE FALSE FALSE 28 0 28 chr6 32544267 rs9269550 A G FALSE TRUE FALSE 127 49 178 chr6 32544772 rs9269579 G A FALSE TRUE FALSE 115 1 117 chr6 32544828 rs35652190 T A FALSE TRUE FALSE 128 2 131 chr6 32544844 rs9269586 T C FALSE TRUE FALSE 134 2 136 chr6 32544871 rs34768485 C A FALSE TRUE FALSE 143 1 144 chr6 32545218 rs9269610 C T FALSE TRUE FALSE 84 18 113 chr6 32545482 rs28626306 C G TRUE FALSE FALSE 62 5 99 chr6 32545862 rs9269640 C T FALSE TRUE FALSE 45 7 52 chr6 32545877 rs9269642 G T FALSE TRUE FALSE 53 12 66 chr6 32546515 rs9269675 C T FALSE TRUE FALSE 41 2 44 chr6 32546743 rs1064707 C T FALSE TRUE FALSE 30 3 36 chr6 32547005 rs115934425 T A FALSE TRUE FALSE 34 2 36 chr6 32547194 rs116737564 C A FALSE TRUE FALSE 40 0 40 chr6 32550995 rs9269889 G T FALSE TRUE FALSE 34 0 34 chr6 32551680 rs9269929 T C FALSE TRUE FALSE 32 0 32 chr6 32552075 rs1064664 A G FALSE TRUE FALSE 25 1 26 chr6 32552779 rs9270003 C T FALSE TRUE FALSE 25 1 26 chr6 32552795 rs114154643 G T FALSE TRUE FALSE 30 3 35 chr6 32555399 rs9270156 C G FALSE TRUE FALSE 26 1 27 chr6 32555721 rs17203769 T C FALSE TRUE FALSE 21 0 21 chr6 32555722 rs17203776 G A FALSE TRUE FALSE 21 0 21 chr6 32604929 rs9272406 G C FALSE TRUE FALSE 22 0 22 chr6 32606878 rs9272544 G A FALSE TRUE FALSE 42 0 42 chr6 32607091 rs9272558 A G FALSE TRUE FALSE 31 2 33 chr6 32607296 rs9272575 C A FALSE TRUE FALSE 51 2 53 chr6 32607389 rs74223427 T C FALSE TRUE FALSE 47 3 50 chr6 32607403 rs9272580 A G FALSE TRUE FALSE 48 3 51 chr6 32607411 rs74223471 G A FALSE TRUE FALSE 50 2 52 chr6 32607666 rs9272602 G A FALSE TRUE FALSE 28 0 28 chr6 32607674 rs9272603 G A FALSE TRUE FALSE 28 0 28 chr6 32607750 rs9272609 T C FALSE TRUE FALSE 34 2 36 chr6 32607767 rs9272610 T C FALSE TRUE FALSE 36 5 41 chr6 32609192 rs1142323 A G FALSE TRUE FALSE 40 7 48 chr6 32609207 rs1142324 C T FALSE TRUE FALSE 41 3 44 chr6 32609341 rs9272712 C T FALSE TRUE FALSE 29 0 29 chr6 32609427 rs56546249 T C FALSE TRUE FALSE 35 5 40 chr6 32610357 rs74223421 A T FALSE TRUE FALSE 48 10 58 chr6 32610786 rs1048645 C T FALSE TRUE FALSE 33 4 37 chr6 32610795 rs1130126 G C FALSE TRUE FALSE 35 3 38 chr6 32610960 rs1142447 G A FALSE TRUE FALSE 34 2 36 chr6 32610972 rs1130158 G A FALSE TRUE FALSE 35 3 38 chr6 32611128 rs9272953 C A FALSE TRUE FALSE 41 0 41 chr6 32611147 rs9272956 T G FALSE TRUE FALSE 38 2 40 chr6 32611170 rs9272958 C A FALSE TRUE FALSE 36 3 39 chr6 32611176 rs1064991 G C FALSE TRUE FALSE 39 3 42 chr6 32611229 rs9272962 G T FALSE TRUE FALSE 35 5 40 chr6 32611255 rs1065045 C T FALSE TRUE FALSE 38 2 40 chr6 32611275 rs1065049 C A FALSE TRUE FALSE 36 2 38 chr6 32611289 rs9272969 A G FALSE TRUE FALSE 39 1 40 chr6 32611302 rs9272971 G C FALSE TRUE FALSE 41 1 42 chr6 32611351 rs9272979 A G FALSE TRUE FALSE 39 2 41 chr6 32611373 rs9272981 G A FALSE TRUE FALSE 48 2 50 chr6 32611376 rs9272982 G A FALSE TRUE FALSE 47 2 49 chr6 32611472 rs78074767 A G FALSE TRUE FALSE 38 1 39 chr6 32611531 rs77484723 T C FALSE TRUE FALSE 50 2 52 chr6 32611795 rs9273029 G A FALSE TRUE FALSE 53 13 67 chr6 32612627 rs9273109 A G FALSE TRUE FALSE 53 3 56 chr6 32612868 rs9273140 T C FALSE TRUE FALSE 44 9 53 chr6 32612952 rs9273145 T A FALSE TRUE FALSE 52 13 65 chr6 32612979 rs9273146 A T FALSE TRUE FALSE 57 14 71 chr6 32612981 rs9273147 A G FALSE TRUE FALSE 56 15 71 chr6 32613273 rs9273175 G A FALSE TRUE FALSE 51 6 57 chr6 32613537 rs9273200 C T FALSE TRUE FALSE 45 0 45 chr6 32613573 rs9273206 T C FALSE TRUE FALSE 48 0 48 chr6 32613610 rs9273209 C T FALSE TRUE FALSE 51 0 51 chr6 32613712 rs9273215 G A FALSE TRUE FALSE 50 0 50 chr6 32613824 rs9273226 C T FALSE TRUE FALSE 61 0 61 chr6 32614025 rs9273241 C T FALSE TRUE FALSE 55 0 55 chr6 32614080 rs9273242 T C FALSE TRUE FALSE 52 0 52 chr6 32614127 rs3998176 C G FALSE TRUE FALSE 50 0 50 chr6 32614318 rs9273265 G A FALSE TRUE FALSE 75 0 75 chr6 32614419 rs72852237 C A FALSE TRUE FALSE 73 0 73 chr6 32614511 rs9273288 T A FALSE TRUE FALSE 88 2 90 chr6 32614534 rs9273289 T A FALSE TRUE FALSE 81 2 83 chr6 32614575 rs9273294 C A FALSE TRUE FALSE 84 2 86 chr6 32614705 rs17843563 T G FALSE TRUE FALSE 88 19 109 chr6 32614706 rs17612475 G A FALSE TRUE FALSE 85 19 106 chr6 32614726 rs17612482 C T FALSE TRUE FALSE 84 24 112 chr6 32614749 rs17612489 T A FALSE TRUE FALSE 92 28 125 chr6 32614752 rs17612496 T G FALSE TRUE FALSE 92 27 124 chr6 32614883 rs17612510 C T FALSE TRUE FALSE 110 25 136 chr6 32614927 rs17612518 G T FALSE TRUE FALSE 90 11 102 chr6 32614928 rs17612526 T C FALSE TRUE FALSE 90 10 101 chr6 32614943 rs17843569 C G FALSE TRUE FALSE 85 7 93 chr6 32615470 rs17612583 G A FALSE TRUE FALSE 127 25 152 chr6 32615510 rs17843577 C T FALSE TRUE FALSE 122 56 178 chr6 32615638 rs17843581 A C FALSE TRUE FALSE 129 62 191 chr6 32615754 rs17612640 G A FALSE TRUE FALSE 105 35 161 chr6 32616003 rs17612727 G T TRUE FALSE FALSE 87 0 106 chr6 32616004 rs17612734 A G TRUE FALSE FALSE 86 0 105 chr6 32617107 rs72852243 G A FALSE TRUE FALSE 36 0 36 chr6 32622923 rs9273304 G A FALSE TRUE FALSE 22 0 22 chr6 32623307 rs9273331 C T FALSE TRUE FALSE 42 6 48 chr6 32623317 rs9273332 A T FALSE TRUE FALSE 43 5 48 chr6 32623325 rs9273333 T C FALSE TRUE FALSE 44 5 49 chr6 32626040 rs4713570 C T FALSE TRUE FALSE 150 53 209 chr6 32626139 rs111575725 C G FALSE TRUE FALSE 155 46 201 chr6 32626272 rs113653754 C A FALSE TRUE FALSE 144 50 194 chr6 32626302 rs112824209 T G FALSE TRUE FALSE 148 50 199 chr6 32626311 rs112935615 T C FALSE TRUE FALSE 145 58 204 chr6 32626786 rs75046732 G C FALSE TRUE FALSE 82 7 89 chr6 32626801 rs76527298 C T FALSE TRUE FALSE 81 6 87 chr6 32626920 rs36206058 C G FALSE TRUE FALSE 66 3 69 chr6 32626925 rs9273382 A G FALSE TRUE FALSE 69 2 71 chr6 32626952 rs4713572 T C FALSE TRUE FALSE 75 3 78 chr6 32626977 rs75974034 T C FALSE TRUE FALSE 80 3 83 chr6 32627038 rs4713574 C G FALSE TRUE FALSE 80 0 81 chr6 32627105 rs9273396 T A FALSE TRUE FALSE 68 2 71 chr6 32627117 rs9273399 C A FALSE TRUE FALSE 68 3 71 chr6 32627128 rs9273400 C T FALSE TRUE FALSE 61 4 65 chr6 32627155 rs9273402 G A FALSE TRUE FALSE 61 6 67 chr6 32627159 rs9273403 A T FALSE TRUE FALSE 57 6 63 chr6 32627180 rs9273406 G C FALSE TRUE FALSE 51 6 57 chr6 32627211 rs17580696 T C FALSE TRUE FALSE 62 6 68 chr6 32627235 rs36204528 C T FALSE TRUE FALSE 61 4 65 chr6 32627250 rs74974352 C A FALSE TRUE FALSE 61 2 63 chr6 32627292 rs9273413 A G FALSE TRUE FALSE 60 7 67 chr6 32627299 rs9273414 A T FALSE TRUE FALSE 57 7 64 chr6 32627310 rs9273415 C T FALSE TRUE FALSE 50 6 56 chr6 32627321 rs9273416 T G FALSE TRUE FALSE 47 6 53 chr6 32627352 rs9273417 A G FALSE TRUE FALSE 48 6 54 chr6 32627434 rs9273426 A C FALSE TRUE FALSE 61 0 61 chr6 32627441 rs9273427 A C FALSE TRUE FALSE 61 0 61 chr6 32627460 rs9273430 T G FALSE TRUE FALSE 65 0 65 chr6 32627535 rs75682559 G T FALSE TRUE FALSE 71 2 73 chr6 32627561 rs9273440 T C FALSE TRUE FALSE 63 9 72 chr6 32627573 rs9273441 C G FALSE TRUE FALSE 57 10 67 chr6 32627582 rs9273442 T G FALSE TRUE FALSE 61 10 71 chr6 32627600 rs75423994 G T FALSE TRUE FALSE 63 10 73 chr6 32627635 rs76741966;rs79804262 T G FALSE TRUE FALSE 57 16 73 chr6 32627646 rs77337612;rs77853184 A G FALSE TRUE FALSE 58 12 70 chr6 32627714 rs1063355 T G FALSE TRUE FALSE 59 15 74 chr6 32627747 rs1049225 A G FALSE TRUE FALSE 66 15 81 chr6 32627773 rs1049213 A G FALSE TRUE FALSE 68 13 82 chr6 32627784 rs79173012 C T FALSE TRUE FALSE 72 14 86 chr6 32627795 rs1766 A G FALSE TRUE FALSE 61 12 73 chr6 32627812 rs9273453 C G FALSE TRUE FALSE 51 7 58 chr6 32627830 rs9273455 C T FALSE TRUE FALSE 52 3 55 chr6 32628407 rs76736591 T C FALSE TRUE FALSE 50 8 58 chr6 32628784 rs3020628 C A FALSE TRUE FALSE 43 1 44 chr6 32628812 rs9273542 C T FALSE TRUE FALSE 41 3 45 chr6 32628873 rs9273549 C T FALSE TRUE FALSE 32 2 34 chr6 32628996 rs9273560 C A FALSE TRUE FALSE 46 0 46 chr6 32628998 rs9273561 T C FALSE TRUE FALSE 47 0 47 chr6 32629064 rs9273584 A T FALSE TRUE FALSE 36 1 37 chr6 32629091 rs9273595 C G FALSE TRUE FALSE 40 1 41 chr6 32629137 rs1140343 T G FALSE TRUE FALSE 39 2 41 chr6 32629141 rs1140342 C T FALSE TRUE FALSE 38 2 40 chr6 32629240 rs9273671 G A FALSE TRUE FALSE 42 0 42 chr6 32629257 rs9273677 T A FALSE TRUE FALSE 40 0 40 chr6 32629314 rs9273710 G A FALSE TRUE FALSE 38 4 42 chr6 32629320 rs9273713 A G FALSE TRUE FALSE 34 4 38 chr6 32629443 rs9273777 T C FALSE TRUE FALSE 47 4 51 chr6 32629447 rs9273781 A G FALSE TRUE FALSE 46 4 50 chr6 32629462 rs76003709 C A FALSE TRUE FALSE 46 5 51 chr6 32630349 rs9274171 G T FALSE TRUE FALSE 57 0 57 chr6 32630856 rs17843720 C T FALSE TRUE FALSE 40 7 47 chr6 32630868 rs9274211 T C FALSE TRUE FALSE 40 7 47 chr6 32630967 rs2854267 C A FALSE TRUE FALSE 41 7 48 chr6 32631149 rs9274228 C T FALSE TRUE FALSE 33 4 37 chr6 32631332 rs9274250 A G FALSE TRUE FALSE 29 0 29 chr6 32631343 rs9274251 T C FALSE TRUE FALSE 27 0 27 chr6 32631348 rs9274253 G A FALSE TRUE FALSE 31 0 31 chr6 32631426 rs17843727 G A FALSE TRUE FALSE 33 0 33 chr6 32631748 rs9274282 C T FALSE TRUE FALSE 32 0 32 chr6 32631783 rs9274284 G A FALSE TRUE FALSE 25 0 25 chr6 32631902 rs9274298 G T FALSE TRUE FALSE 33 1 34 chr6 32631958 rs9274299 C T FALSE TRUE FALSE 28 0 28 chr6 32633131 rs9274436 C G FALSE TRUE FALSE 24 0 24 chr6 32633174 rs9274437 C T FALSE TRUE FALSE 24 0 24 chr6 32633181 rs9274438 T C FALSE TRUE FALSE 22 0 22 chr6 32633334 rs9274450 A G FALSE TRUE FALSE 23 0 23 chr7 6498731 rs73057391 G T TRUE FALSE TRUE 28 2 32 chr7 98977428 rs73148804 A T TRUE FALSE FALSE 30 2 44 chr7 102091227 rs116235790 C T FALSE TRUE FALSE 34 0 34 chr7 150135758 rs1916931 C A FALSE TRUE FALSE 7 39 46 chr8 101718932 rs62513920 C G TRUE FALSE FALSE 29 0 29 chr9 35681299 rs1538535 C T FALSE TRUE FALSE 1 47 48 chr9 35681368 rs4879924 T C TRUE FALSE FALSE 40 1 41 chr9 35681548 rs7853785 G C TRUE FALSE FALSE 52 0 52 chr10 26862988 rs75998560 A G FALSE TRUE FALSE 35 0 42 chr11 764925 rs72844779 C T FALSE TRUE TRUE 34 0 34 chr12 9851808 rs10772046 G T FALSE TRUE FALSE 15 68 83 chr12 9851929 rs1044771 C A TRUE FALSE TRUE 63 11 80 chr12 9866399 rs7964018 A G TRUE FALSE TRUE 24 0 24 chr12 29630824 rs11050249 A T FALSE TRUE FALSE 0 21 21 chr12 72183518 rs75751109 A G TRUE FALSE TRUE 22 0 22 chr12 80162188 rs34419087 G C FALSE TRUE TRUE 1 48 49 chr13 79884163 rs115827022 C A FALSE TRUE FALSE 37 2 41 chr13 103336425 rs616287 A T FALSE TRUE FALSE 1 29 32 chr14 21694482 rs10132259 A G FALSE TRUE FALSE 0 23 25 chr14 39652889 rs35215911 T C FALSE TRUE TRUE 3 48 53 chr14 50048731 rs9652337 A C FALSE TRUE TRUE 89 18 114 chr14 100611950 rs4905935 A G TRUE FALSE FALSE 0 25 25 chr14 106317994 rs2180790 T G FALSE TRUE FALSE 95 244 339 chr14 106319953 rs72715449 A G TRUE FALSE FALSE 123 36 166 chr14 106320092 rs2256346 C T FALSE TRUE FALSE 62 257 322 chr14 106322972 rs1956596 G A FALSE TRUE FALSE 45 159 204 chr14 106326538 rs72715451 G C TRUE FALSE FALSE 193 43 236 chr14 106326658 rs72715453 C T TRUE FALSE FALSE 183 45 229 chr14 106326733 rs980847 A G FALSE TRUE FALSE 48 215 263 chr14 106326951 rs72715454 A G TRUE FALSE FALSE 242 46 288 chr14 106327472 rs72715455 T A TRUE FALSE FALSE 237 44 281 chr14 106327507 rs114127635 G A TRUE FALSE FALSE 223 36 260 chr14 106327553 rs72715456 T C TRUE FALSE FALSE 207 36 244 chr14 106327561 rs72715459 T G TRUE FALSE FALSE 190 39 229 chr14 106328066 rs1950942 G A FALSE TRUE FALSE 59 304 363 chr14 106329230 rs72715464 C G TRUE FALSE FALSE 19 146 165 chr14 106329597 rs114994021 T C FALSE TRUE FALSE 162 0 162 chr14 106405671 rs114619038 C T TRUE FALSE FALSE 0 45 57 chr14 106405699 rs72715478 G C TRUE FALSE FALSE 0 73 88 chr14 106405720 rs72715479 A G TRUE FALSE FALSE 0 83 95 chr14 106405726 rs72715480 T C TRUE FALSE FALSE 0 92 104 chr14 106405752 rs72715481 G A TRUE FALSE FALSE 0 100 110 chr14 106405791 rs72715482 C G TRUE FALSE FALSE 0 93 101 chr14 106405811 rs72715485 C T TRUE FALSE FALSE 0 90 96 chr14 106405877 rs72715486 T C TRUE FALSE FALSE 1 127 129 chr17 16840448 rs72835980 C T TRUE FALSE TRUE 48 0 48 chr17 21219105 rs1714838 C T TRUE FALSE TRUE 41 0 41 chr17 33571309 rs57708672 G T TRUE FALSE FALSE 1 32 33 chr17 33571546 rs11080327 G A TRUE FALSE FALSE 1 25 26 chr17 33572545 rs11657549 C G TRUE FALSE FALSE 0 21 21 chr17 33575912 rs11080329 G T FALSE TRUE FALSE 21 0 21 chr17 33577065 rs10853177 C A TRUE FALSE FALSE 3 31 34 chr17 33577350 rs12946316 T C TRUE FALSE FALSE 0 21 21 chr17 33577829 rs11656992 G A TRUE FALSE FALSE 1 34 35 chr17 33578415 rs11654843 T G TRUE FALSE FALSE 0 43 44 chr17 33595898 rs72825917 G A FALSE TRUE FALSE 26 1 27 chr17 33596090 rs9893542 T G FALSE TRUE FALSE 27 1 28 chr17 33596183 rs2671823 C T TRUE FALSE FALSE 0 31 31 chr17 33596897 rs1233 G A TRUE FALSE FALSE 1 25 26 chr17 37360844 rs72823350 G A FALSE TRUE TRUE 32 0 32 chr17 73133629 rs9896254 T G TRUE FALSE TRUE 0 27 28 chr19 9278016 rs73006078 A G FALSE TRUE FALSE 44 0 44 chr19 20047692 rs73008678 G A FALSE TRUE TRUE 22 0 22 chr19 23299713 rs73029453 C G FALSE TRUE FALSE 3 33 36 chr19 35841284 rs28495605 T C TRUE FALSE FALSE 18 64 82 chr19 49520502 rs1960072 C T TRUE FALSE TRUE 0 21 22 chr19 55912332 rs11669732 C T FALSE TRUE TRUE 0 44 44 chr20 2639728 rs5026920 C T FALSE TRUE FALSE 69 12 99 chr21 30429982 rs73192130 A T TRUE FALSE TRUE 23 0 26 chr21 43788690 rs1788413 C A FALSE TRUE FALSE 27 0 27 chr21 43789772 rs424694 C T FALSE TRUE FALSE 28 0 28 chr21 43789899 rs462149 A G FALSE TRUE FALSE 21 0 21 chr22 23243979 rs4822338 G A TRUE FALSE FALSE 51 7 61 chr22 23245236 rs2859790 G C FALSE TRUE TRUE 65 13 82 chr22 39422766 rs11089918 T G FALSE TRUE TRUE 0 24 24 chrX 70321631 rs5980742 T G FALSE TRUE FALSE 0 26 26