chr pos id ref alt mat pat unphased ref alt tot chr1 56866206 rs116199806 C A TRUE FALSE TRUE 40 0 40 chr1 87958314 rs61771752 C T FALSE TRUE TRUE 21 0 21 chr1 101821850 rs11164174 A C FALSE TRUE TRUE 0 23 28 chr1 105249209 rs35739923 A C TRUE FALSE FALSE 47 7 54 chr1 143539542 rs2313328 T C FALSE TRUE FALSE 2 65 67 chr1 143539565 rs2313327 T A FALSE TRUE FALSE 2 66 68 chr1 199139805 rs1994112 A T TRUE FALSE TRUE 0 30 31 chr1 227759413 rs116590853 G A TRUE FALSE TRUE 30 0 30 chr1 243270150 rs2087437 G A TRUE FALSE FALSE 30 0 30 chr2 38001419 rs72799895 A G TRUE FALSE TRUE 28 0 39 chr2 42962406 rs115611109 G A TRUE FALSE TRUE 29 0 29 chr2 58778565 rs72813964 T C TRUE FALSE FALSE 23 0 23 chr2 58778569 rs72813965 G A TRUE FALSE FALSE 23 0 23 chr2 73856501 rs35103131 A T FALSE TRUE TRUE 0 25 25 chr2 101850856 rs74221465 A G TRUE FALSE TRUE 35 0 38 chr2 103418042 rs72829935 A G TRUE FALSE TRUE 39 0 39 chr2 114451884 rs10187723 G A FALSE TRUE FALSE 10 50 60 chr2 114737694 rs13411523 A G FALSE TRUE FALSE 8 62 71 chr2 132109505 rs72856813 A T TRUE FALSE FALSE 25 0 26 chr2 132109513 rs116554829 A G TRUE FALSE FALSE 23 0 24 chr2 149045613 rs116215861 A T FALSE TRUE FALSE 25 0 25 chr2 225538355 rs36032547 A T TRUE FALSE TRUE 0 28 28 chr2 235224629 rs9678331 G C TRUE FALSE TRUE 38 4 42 chr3 10210705 rs113971397 G A FALSE TRUE TRUE 42 0 42 chr3 38125791 rs74774065 T G FALSE TRUE FALSE 22 0 30 chr3 61618935 rs12497685 G T FALSE TRUE FALSE 44 9 53 chr3 75776176 rs114099470 A G TRUE FALSE TRUE 34 0 34 chr3 75777033 rs115595728 A G TRUE FALSE TRUE 32 3 35 chr3 75780913 rs6782433 A T FALSE TRUE TRUE 0 32 32 chr3 75815849 rs75931477 A G TRUE FALSE TRUE 29 0 29 chr3 75819728 rs73119212 G A TRUE FALSE TRUE 25 0 25 chr3 75821252 rs79431554 A G TRUE FALSE TRUE 26 0 26 chr3 75824118 rs75925958 C A TRUE FALSE TRUE 27 1 28 chr3 101454745 rs73159271 C T FALSE TRUE FALSE 27 0 27 chr3 104237589 rs2961357 C T TRUE FALSE FALSE 5 44 49 chr3 104237607 rs2961358 C T TRUE FALSE FALSE 8 49 57 chr3 104237951 rs2943729 C T TRUE FALSE FALSE 5 35 41 chr3 113965537 rs76137003 C T FALSE TRUE TRUE 34 0 34 chr3 125531049 rs116165305 A G FALSE TRUE FALSE 21 0 21 chr3 129807221 rs73208698 T A TRUE FALSE TRUE 22 0 22 chr3 150398810 rs58101508 C T FALSE TRUE FALSE 50 11 61 chr3 178872355 rs11706842 C T FALSE TRUE FALSE 25 1 26 chr4 4526636 rs28529847 G A TRUE FALSE FALSE 0 29 29 chr4 69129789 rs72649694 T C TRUE FALSE FALSE 21 0 21 chr4 77736514 rs10776489 A G FALSE TRUE FALSE 0 35 35 chr4 119125452 rs112269249 A T TRUE FALSE TRUE 2 32 34 chr4 175855153 rs11133063 T G TRUE FALSE TRUE 45 4 49 chr4 185220978 rs72699785 A T TRUE FALSE FALSE 26 0 26 chr4 190476190 rs12641329 C T TRUE FALSE FALSE 25 1 26 chr4 190496149 rs2436813 G C TRUE FALSE FALSE 0 28 28 chr4 190936599 rs116688191 G C FALSE TRUE TRUE 28 0 28 chr4 190936790 rs79427622 G A FALSE TRUE TRUE 26 0 26 chr4 190940158 rs113190553 C T FALSE TRUE FALSE 24 0 24 chr4 190940173 rs114266413 A G FALSE TRUE TRUE 23 0 23 chr4 190940510 rs79247952 T C FALSE TRUE FALSE 23 0 23 chr4 190940514 rs72724889 A G FALSE TRUE FALSE 24 0 24 chr4 190942271 rs116524969 A G FALSE TRUE TRUE 28 0 28 chr4 190942542 rs115172598 G T FALSE TRUE TRUE 26 0 26 chr4 190942693 rs116579956 T G FALSE TRUE TRUE 39 0 40 chr4 190942710 rs116596689 A T FALSE TRUE TRUE 41 0 42 chr4 190944098 rs114248802 G C TRUE FALSE TRUE 43 0 44 chr5 60555388 rs4379148 C A TRUE FALSE TRUE 0 21 24 chr5 60555550 rs76962958 A G TRUE FALSE FALSE 22 0 25 chr5 72741018 rs115822401 G A FALSE TRUE FALSE 61 0 62 chr5 74186564 rs55979253 G A TRUE FALSE TRUE 19 67 87 chr5 86477611 rs72781776 G A TRUE FALSE FALSE 27 0 27 chr5 100158495 rs2544916 T A TRUE FALSE FALSE 0 44 48 chr5 108739483 rs6594373 A C TRUE FALSE TRUE 4 41 45 chr5 131463277 rs114771939 G A FALSE TRUE FALSE 36 0 36 chr5 137310312 rs35051918 A T FALSE TRUE FALSE 1 37 38 chr5 170287698 rs7722978 A T TRUE FALSE FALSE 30 3 33 chr6 31296487 rs116293153 A T FALSE TRUE FALSE 53 10 70 chr6 31305000 rs115531318 C T TRUE FALSE FALSE 80 0 89 chr6 31305073 rs115719026 T G TRUE FALSE FALSE 102 0 115 chr6 31305341 rs115419143 A T TRUE FALSE FALSE 54 0 54 chr6 31358722 rs112035697 T C FALSE TRUE FALSE 38 2 61 chr6 32439504 rs112101943 A T TRUE FALSE TRUE 21 0 28 chr6 32445807 rs114258044 G A FALSE TRUE TRUE 32 0 38 chr6 32446414 rs112784667 G A FALSE TRUE FALSE 29 0 29 chr6 32504015 rs77519599 A G FALSE TRUE FALSE 22 0 22 chr6 32504438 rs72851071 A G FALSE TRUE FALSE 21 0 21 chr6 32504444 rs113059745 T C FALSE TRUE FALSE 22 0 22 chr6 32504571 rs113092262 T C FALSE TRUE FALSE 35 0 36 chr6 32504810 rs62405586 C T TRUE FALSE FALSE 25 1 28 chr6 32505141 rs72508465 C T FALSE TRUE FALSE 22 0 22 chr6 32567880 rs4341046 C T FALSE TRUE FALSE 52 9 61 chr6 32568426 rs80119848 C T FALSE TRUE FALSE 37 4 41 chr6 32568429 rs9270753 C T FALSE TRUE FALSE 36 5 41 chr6 32569911 rs75323052 A G FALSE TRUE FALSE 30 3 33 chr6 32570571 rs75832985 T C FALSE TRUE FALSE 30 1 31 chr6 32570577 rs79984096 A T FALSE TRUE FALSE 29 2 31 chr6 32570602 rs9270847 G T FALSE TRUE FALSE 34 1 35 chr6 32570609 rs9270848 C T FALSE TRUE FALSE 32 1 33 chr6 32570649 rs9270849 C T FALSE TRUE FALSE 25 1 26 chr6 32570817 rs678770 T A FALSE TRUE FALSE 33 3 36 chr6 32570839 rs78534319 A G FALSE TRUE FALSE 34 4 38 chr6 32571117 rs76069499 A G FALSE TRUE FALSE 33 0 34 chr6 32571227 rs77010900 G A FALSE TRUE FALSE 42 1 43 chr6 32579365 rs9271222 C T FALSE TRUE FALSE 35 0 35 chr6 32598946 rs113409209 T G FALSE TRUE FALSE 40 4 44 chr6 32598971 rs113169556 C A FALSE TRUE FALSE 38 1 39 chr6 32599031 rs115725816 T A FALSE TRUE FALSE 25 1 26 chr6 32614318 rs9273265 G A FALSE TRUE FALSE 22 0 22 chr6 32617107 rs72852243 G A FALSE TRUE FALSE 25 0 25 chr6 32623233 rs9273328 G A FALSE TRUE FALSE 24 0 24 chr6 32623242 rs9273329 G A FALSE TRUE FALSE 27 0 27 chr6 32623300 rs9273330 C T FALSE TRUE FALSE 23 0 23 chr6 32623307 rs9273331 C T FALSE TRUE FALSE 23 0 23 chr6 32623317 rs9273332 A T FALSE TRUE FALSE 23 0 23 chr6 32623325 rs9273333 T C FALSE TRUE FALSE 21 0 21 chr6 33090710 rs116499094 T C TRUE FALSE FALSE 36 4 40 chr6 33090758 rs115483322 T C TRUE FALSE FALSE 30 2 32 chr6 37008210 rs1753299 T C TRUE FALSE FALSE 0 22 22 chr6 52120843 rs116719586 T A FALSE TRUE FALSE 23 0 28 chr6 57263850 rs72871666 T C FALSE TRUE TRUE 55 11 66 chr6 57290031 rs72873517 A G TRUE FALSE TRUE 40 3 44 chr6 57303593 rs72873556 C T FALSE TRUE TRUE 32 0 32 chr6 85483487 rs170019 T C FALSE TRUE FALSE 0 33 34 chr6 166901903 rs9366022 G A FALSE TRUE FALSE 4 34 38 chr6 166902211 rs3765235 C T FALSE TRUE FALSE 5 60 65 chr7 63236750 rs73137556 C T FALSE TRUE TRUE 21 0 22 chr7 98684841 rs6465733 A T TRUE FALSE FALSE 0 41 41 chr7 119997704 rs73217207 G T FALSE TRUE TRUE 21 0 21 chr7 151984805 rs73164507 C A TRUE FALSE FALSE 22 0 22 chr7 151988306 rs2360877 C A FALSE TRUE FALSE 45 6 51 chr7 152074484 rs9986839 C T FALSE TRUE FALSE 52 2 54 chr7 159100694 rs76320845 T A TRUE FALSE TRUE 21 0 21 chr7 159102962 rs74846275 T C FALSE TRUE TRUE 21 0 24 chr7 159104873 rs74807957 A G FALSE TRUE TRUE 26 0 36 chr8 2577859 rs73175196 C T TRUE FALSE FALSE 29 2 31 chr8 54648913 rs72655177 G A FALSE TRUE FALSE 51 0 51 chr8 72821397 rs7016495 T C TRUE FALSE TRUE 0 62 62 chr8 100061457 rs115060864 C T FALSE TRUE FALSE 40 0 42 chr9 96387397 rs74824309 A T TRUE FALSE FALSE 23 0 23 chr9 98520907 rs115512667 T C TRUE FALSE FALSE 33 2 35 chr9 113571686 rs67341957 A G TRUE FALSE FALSE 39 5 44 chr9 114798940 rs3739699 G A FALSE TRUE FALSE 55 3 58 chr9 129765983 rs9696569 A T TRUE FALSE FALSE 0 26 26 chr9 131614160 rs72758873 T C FALSE TRUE TRUE 56 0 56 chr9 132031535 rs7046279 A G FALSE TRUE TRUE 24 0 26 chr10 26860353 rs74601568 T C TRUE FALSE FALSE 25 0 26 chr10 26862988 rs75998560 A G FALSE TRUE FALSE 27 0 33 chr10 26916425 rs72788639 C T FALSE TRUE FALSE 21 0 23 chr10 26916877 rs74842497 G A FALSE TRUE FALSE 24 0 24 chr10 27239553 rs66757415 A G FALSE TRUE FALSE 45 0 46 chr10 27620558 rs79923853 T C FALSE TRUE FALSE 25 0 28 chr10 97850611 rs17384909 G A TRUE FALSE FALSE 58 6 64 chr10 112484853 rs10749050 A G TRUE FALSE FALSE 5 39 44 chr11 4476731 rs72854374 G A FALSE TRUE FALSE 26 0 26 chr11 11876147 rs10831684 A G FALSE TRUE FALSE 23 0 23 chr11 67997248 rs113998889 A T TRUE FALSE FALSE 40 0 46 chr11 82392941 rs72954077 G C FALSE TRUE FALSE 25 0 25 chr11 121183503 rs73017154 C T TRUE FALSE TRUE 40 0 40 chr12 10519418 rs76992224 G T TRUE FALSE TRUE 27 0 27 chr12 11178537 rs73049034 C A TRUE FALSE FALSE 33 2 42 chr12 11181609 rs2418296 A G FALSE TRUE TRUE 23 0 32 chr12 11183977 rs73254862 G A TRUE FALSE FALSE 21 0 21 chr12 11203340 rs72475502 G T TRUE FALSE FALSE 28 0 38 chr12 11206765 rs79497235 C T TRUE FALSE FALSE 28 0 28 chr12 11278193 rs73049615 C T FALSE TRUE TRUE 21 0 26 chr12 14926504 rs11056183 A G TRUE FALSE FALSE 7 43 50 chr12 26881788 rs34093108 C T FALSE TRUE FALSE 50 9 59 chr12 26881800 rs34629155 G A FALSE TRUE FALSE 54 8 62 chr12 58039904 rs11514192 C A FALSE TRUE FALSE 0 25 29 chr12 81102921 rs3121 T C TRUE FALSE FALSE 11 49 60 chr12 82769238 rs2401033 A G TRUE FALSE FALSE 1 30 32 chr12 133671234 rs114076365 C G FALSE TRUE TRUE 35 0 35 chr12 133671262 rs115865405 A G FALSE TRUE FALSE 40 0 40 chr12 133671295 rs115797595 C T FALSE TRUE TRUE 38 0 38 chr12 133671394 rs114528529 G A FALSE TRUE TRUE 46 0 46 chr13 21728012 rs9316143 G C TRUE FALSE FALSE 0 28 28 chr13 24382148 rs17338049 G C TRUE FALSE FALSE 5 35 40 chr13 29877989 rs117810469 T A FALSE TRUE TRUE 22 0 22 chr13 62780110 rs9285236 G A FALSE TRUE FALSE 1 38 39 chr13 62781775 rs7981757 A C FALSE TRUE FALSE 2 37 39 chr13 62782367 rs7983039 C T FALSE TRUE FALSE 5 46 51 chr13 62785043 rs5020675 T G FALSE TRUE FALSE 5 39 44 chr13 62785840 rs9646048 C T FALSE TRUE FALSE 4 35 39 chr14 65918781 rs116458930 C T FALSE TRUE FALSE 27 0 39 chr14 89786994 rs4904544 A G TRUE FALSE TRUE 0 25 26 chr14 107110321 rs113011035 C A TRUE FALSE FALSE 34 0 34 chr14 107260771 rs72692495 C T TRUE FALSE FALSE 29 0 37 chr16 9227392 rs8058645 G A TRUE FALSE FALSE 2 30 32 chr16 18783295 rs114671527 A T TRUE FALSE FALSE 58 1 60 chr16 84052690 rs9926164 T A FALSE TRUE FALSE 0 21 23 chr17 21355406 rs72838675 T A FALSE TRUE FALSE 25 0 25 chr17 34337472 rs1734956 T G FALSE TRUE FALSE 0 25 25 chr17 72510477 rs72852230 A G TRUE FALSE FALSE 39 0 45 chr18 9601213 rs9676119 T G TRUE FALSE TRUE 1 28 34 chr18 12860285 rs521453 A C TRUE FALSE FALSE 0 38 38 chr18 23791089 rs11083166 T G TRUE FALSE FALSE 1 28 29 chr18 61483380 rs1720885 G T TRUE FALSE FALSE 36 5 44 chr18 77385653 rs7244568 C A FALSE TRUE FALSE 21 0 21 chr19 12507992 rs8101782 A C FALSE TRUE FALSE 4 40 44 chr19 16168051 rs74739574 G A TRUE FALSE TRUE 42 0 52 chr19 19907901 rs73008611 A T TRUE FALSE TRUE 60 0 60 chr19 20047692 rs73008678 G A FALSE TRUE TRUE 45 0 46 chr19 20588973 rs7258093 G T FALSE TRUE FALSE 24 0 24 chr19 21492722 rs114788316 G A TRUE FALSE TRUE 22 0 24 chr19 21700921 rs78106743 A T TRUE FALSE TRUE 35 0 36 chr19 21700944 rs73019712 G A TRUE FALSE TRUE 38 0 39 chr19 21708705 rs73019744 G A FALSE TRUE TRUE 24 0 33 chr19 21752976 rs73929329 T A TRUE FALSE TRUE 34 4 51 chr19 21759892 rs73027743 T C TRUE FALSE TRUE 22 0 23 chr19 21919934 rs8105002 A T TRUE FALSE TRUE 0 34 35 chr19 21922765 rs73020289 C A TRUE FALSE FALSE 21 0 21 chr19 21923704 rs73020291 C T TRUE FALSE FALSE 32 0 32 chr19 21923842 rs73020296 C A TRUE FALSE TRUE 39 0 39 chr19 22005036 rs80237265 A G TRUE FALSE FALSE 35 0 35 chr19 23412120 rs73012473 C T FALSE TRUE TRUE 26 0 26 chr19 44870736 rs73043752 G A FALSE TRUE FALSE 23 0 23 chr19 49890873 rs7251704 T G TRUE FALSE FALSE 4 39 43 chr19 51905574 rs73066861 G A TRUE FALSE FALSE 67 0 67 chr19 52968688 rs73055381 G C TRUE FALSE FALSE 24 0 25 chr19 53357748 rs73069445 T C FALSE TRUE FALSE 29 0 29 chr19 53872342 rs72483988 C T TRUE FALSE TRUE 21 0 21 chr20 52676295 rs290432 T C TRUE FALSE FALSE 2 38 40 chr20 62597694 rs817329 T G FALSE TRUE TRUE 26 0 26 chr20 62642057 rs2427590 T C TRUE FALSE FALSE 53 12 66 chr20 62645116 rs816915 C T TRUE FALSE FALSE 80 12 92 chr21 43822200 rs11909930 C A FALSE TRUE FALSE 4 42 47 chr21 43822402 rs11909987 C A FALSE TRUE FALSE 2 34 37 chr21 45829360 rs2776379 A G TRUE FALSE TRUE 0 25 25 chrX 49969770 rs67671217 T G FALSE TRUE TRUE 22 0 22