chr pos id ref alt mat pat unphased ref alt tot chr1 44534252 rs16831607 T G FALSE TRUE FALSE 33 2 35 chr1 44534476 rs72686003 A G FALSE TRUE FALSE 46 3 49 chr1 56762443 rs2793685 C T FALSE TRUE FALSE 47 0 47 chr1 64029606 rs217474 G A TRUE FALSE FALSE 36 0 36 chr1 107419187 rs72695451 G A TRUE FALSE FALSE 11 72 83 chr1 158922287 rs856090 T C FALSE TRUE FALSE 2 40 42 chr1 158922400 rs6674847 T G TRUE FALSE FALSE 89 9 98 chr1 158922438 rs6674861 T C TRUE FALSE FALSE 64 9 73 chr1 203256634 rs4971220 T G TRUE FALSE FALSE 30 97 128 chr1 203256800 rs4971226 T G TRUE FALSE FALSE 48 183 232 chr2 465084 rs72776421 T C TRUE FALSE FALSE 58 1 59 chr2 465300 rs868559 T G TRUE FALSE FALSE 26 0 26 chr2 127395175 rs12993668 G A TRUE FALSE FALSE 1 30 31 chr2 156490877 rs843247 G A TRUE FALSE TRUE 102 0 102 chr2 156490894 rs1400703 C T FALSE TRUE TRUE 1 104 105 chr2 171036970 rs72882099 T C TRUE FALSE FALSE 2 67 69 chr2 218263807 rs6734186 G A FALSE TRUE TRUE 28 0 28 chr2 235334750 rs4074423 C T FALSE TRUE FALSE 8 58 66 chr2 235334930 rs906747 G A FALSE TRUE FALSE 1 30 31 chr2 235355064 rs10210757 C T FALSE TRUE TRUE 8 129 142 chr2 235480951 rs72979564 T C TRUE FALSE FALSE 82 12 94 chr3 4515867 rs57858215 A G FALSE TRUE FALSE 46 5 51 chr3 6759106 rs58578329 A G FALSE TRUE FALSE 73 12 85 chr3 6759247 rs62246827 T C FALSE TRUE FALSE 114 30 145 chr3 6759325 rs57346569 T A FALSE TRUE FALSE 95 20 115 chr3 14267211 rs12639212 A G TRUE FALSE FALSE 1 26 28 chr3 16414198 rs689662 G A FALSE TRUE FALSE 45 241 288 chr3 16414473 rs689876 T C FALSE TRUE FALSE 12 56 68 chr3 53252338 rs11130358 G A FALSE TRUE FALSE 114 1 115 chr3 61806399 rs11130853 G A TRUE FALSE FALSE 1 48 49 chr3 62030718 rs12489693 G T TRUE FALSE FALSE 0 55 55 chr3 95106563 rs1516610 C G FALSE TRUE FALSE 1 37 39 chr3 122308318 rs7615345 A G TRUE FALSE FALSE 78 13 91 chr3 196647724 rs9860985 C T FALSE TRUE FALSE 1 28 29 chr4 25486925 rs6846016 G T TRUE FALSE TRUE 6 52 58 chr4 105640872 rs2651326 G A FALSE TRUE TRUE 22 0 22 chr4 176934859 rs13111443 T C TRUE FALSE FALSE 84 24 108 chr5 58858708 rs17798319 C T TRUE FALSE FALSE 74 20 94 chr5 125165191 rs327837 G A FALSE TRUE FALSE 63 1 65 chr5 171627701 rs17074425 G A TRUE FALSE FALSE 33 0 33 chr6 4154018 rs13206717 A G TRUE FALSE FALSE 0 24 24 chr6 4154143 rs13206876 A G TRUE FALSE FALSE 0 62 62 chr6 7439632 rs4959438 T C FALSE TRUE FALSE 21 80 102 chr6 11520033 rs17608111 A G FALSE TRUE FALSE 32 88 120 chr6 32571771 rs9270885 G A FALSE TRUE FALSE 5 44 49 chr6 32571777 rs9270886 G A FALSE TRUE FALSE 6 47 53 chr6 32571789 rs9270887 C A FALSE TRUE FALSE 4 47 51 chr6 32571801 rs4478449 A G FALSE TRUE FALSE 3 46 49 chr6 40116622 rs9394656 A C TRUE FALSE FALSE 333 175 509 chr6 56235826 rs6899968 C A FALSE TRUE FALSE 1 64 66 chr6 68804218 rs9354671 A G TRUE FALSE FALSE 84 12 96 chr6 88887810 rs6454679 G C FALSE TRUE FALSE 251 148 399 chr6 97243595 rs9386830 C T FALSE TRUE FALSE 2 57 59 chr6 150962698 rs275343 A T TRUE FALSE FALSE 8 74 82 chr6 150962712 rs73004316 T C FALSE TRUE FALSE 69 8 77 chr7 37456550 rs10231696 G A TRUE FALSE FALSE 0 51 51 chr7 54664542 rs621827 C G FALSE TRUE FALSE 89 9 99 chr7 54664693 rs548928 G A FALSE TRUE FALSE 123 27 150 chr7 93671907 rs10953106 T C TRUE FALSE FALSE 59 11 70 chr7 98679022 rs73147604 C T TRUE FALSE FALSE 1 104 105 chr7 100769538 rs2227631 A G FALSE TRUE FALSE 2 31 33 chr7 142739944 rs73170661 T C TRUE FALSE FALSE 1 28 30 chr8 8602196 rs10503393 C A FALSE TRUE FALSE 134 62 196 chr8 8602396 rs78296417 A T FALSE TRUE FALSE 116 46 163 chr8 11826182 rs7834869 C T FALSE TRUE FALSE 25 0 25 chr8 38815193 rs34124032 C T FALSE TRUE TRUE 316 570 886 chr8 121881135 rs12682500 G A TRUE FALSE FALSE 98 4 102 chr8 121881153 rs12682501 G A TRUE FALSE FALSE 98 7 105 chr8 135331165 rs11787028 A G TRUE FALSE FALSE 66 20 86 chr9 31146951 rs1999686 C T TRUE FALSE FALSE 6 72 78 chr9 31146953 rs1999687 G T TRUE FALSE FALSE 6 72 78 chr9 110945296 rs607019 C T TRUE FALSE FALSE 10 50 60 chr10 5894500 rs10905307 A G TRUE FALSE FALSE 99 17 116 chr10 17627240 rs4548526 A G FALSE TRUE FALSE 9 49 58 chr10 17627338 rs72780753 C T FALSE TRUE FALSE 4 36 40 chr10 87984457 rs10887562 C T FALSE TRUE TRUE 1 31 32 chr10 115794898 rs7079542 A G TRUE FALSE FALSE 0 64 64 chr11 63719621 rs11607028 C A FALSE TRUE FALSE 0 23 23 chr11 78101985 rs1567891 A G TRUE FALSE FALSE 0 27 27 chr12 125412376 rs10846772 G A TRUE FALSE FALSE 6 80 86 chr12 125412387 rs56211891 A G FALSE TRUE FALSE 85 7 92 chr12 125412466 rs56260043 G C FALSE TRUE FALSE 37 4 42 chr12 125412478 rs10846773 A G TRUE FALSE FALSE 4 41 46 chr13 29211078 rs1161123 A C TRUE FALSE FALSE 62 16 78 chr13 31586558 rs1854111 T C TRUE FALSE FALSE 12 102 114 chr13 31586741 rs9567763 C T TRUE FALSE FALSE 7 62 69 chr13 44507689 rs687582 T C TRUE FALSE FALSE 95 261 357 chr14 78108110 rs4903620 T C TRUE FALSE FALSE 1 27 28 chr14 90348415 rs56247771 C T FALSE TRUE FALSE 75 6 81 chr14 93170901 rs2402189 A C FALSE TRUE FALSE 8 70 78 chr15 62319307 rs12442448 T G TRUE FALSE FALSE 168 44 213 chr15 62319432 rs72749754 G C TRUE FALSE FALSE 98 22 120 chr15 67318612 rs8031538 T C FALSE TRUE FALSE 33 3 37 chr15 81116574 rs11633750 A C FALSE TRUE TRUE 5 42 50 chr16 8749156 rs67463488 C A FALSE TRUE FALSE 16 115 131 chr16 9935066 rs6497540 T G FALSE TRUE FALSE 51 120 171 chr16 85137251 rs6564101 T C TRUE FALSE FALSE 0 49 49 chr16 88103714 rs28465438 G A FALSE TRUE FALSE 24 79 103 chr17 12843178 rs2322709 A C FALSE TRUE TRUE 59 0 59 chr17 30850398 rs12949671 G A FALSE TRUE FALSE 183 37 221 chr18 21281168 rs1788813 T C TRUE FALSE TRUE 14 69 83 chr18 42741986 rs16978286 C T FALSE TRUE TRUE 1 53 54 chr18 45206449 rs8091960 G A FALSE TRUE FALSE 6 172 179 chr19 59000273 rs4801273 A G TRUE FALSE FALSE 5 39 44 chr20 42579188 rs4812774 C T TRUE FALSE FALSE 24 0 24 chr22 30193548 rs2349225 A T TRUE FALSE FALSE 74 12 86 chr22 30193598 rs11702929 T C FALSE TRUE FALSE 14 68 82 chr22 44116662 rs5764237 T C TRUE FALSE FALSE 2 97 99 chr22 44116796 rs66533958 C T TRUE FALSE FALSE 1 137 138 chr22 44116810 rs5764238 C G TRUE FALSE FALSE 1 133 134