chr pos id ref alt mat pat unphased ref alt tot chr1 17231687 rs9435780 C T TRUE FALSE FALSE 158 17 223 chr1 17231951 rs7412249 A G TRUE FALSE FALSE 209 38 248 chr1 52560522 rs2897384 T G TRUE FALSE FALSE 1 27 28 chr1 101843754 rs61782502 T C TRUE FALSE FALSE 0 22 22 chr1 101846774 rs56360252 G A FALSE TRUE FALSE 24 0 24 chr1 101851728 rs11164184 G A TRUE FALSE FALSE 0 23 23 chr1 111450408 rs1936942 G A FALSE TRUE FALSE 4 35 39 chr1 111676852 rs325936 A G FALSE TRUE FALSE 0 40 41 chr2 89155047 rs232233 T G TRUE FALSE TRUE 172 74 246 chr2 89158392 rs115888718 T A TRUE FALSE FALSE 410 580 992 chr2 89158427 rs72846202 T A TRUE FALSE FALSE 397 575 974 chr2 89159873 rs115644528 T C TRUE FALSE FALSE 304 132 476 chr2 89160073 rs116162069 T A TRUE FALSE FALSE 202 22 349 chr2 89160390 rs116668961 G A TRUE FALSE FALSE 15 254 272 chr2 89160683 rs75553379 T C TRUE FALSE FALSE 9 190 199 chr2 89160691 rs115487104 T A TRUE FALSE FALSE 9 195 205 chr2 89160715 rs115655195 T G TRUE FALSE FALSE 7 183 190 chr2 89160730 rs115126804 T G TRUE FALSE FALSE 8 167 175 chr2 89160739 rs72847527 T C TRUE FALSE FALSE 6 163 169 chr2 89160763 rs72847528 A C TRUE FALSE FALSE 6 141 148 chr2 89160931 rs72847529 A T TRUE FALSE FALSE 3 39 42 chr3 170581325 rs1399499 G A FALSE TRUE TRUE 5 52 57 chr3 170582336 rs1818533 A G TRUE FALSE FALSE 13 94 107 chr4 113196906 rs3202899 T C FALSE TRUE TRUE 0 28 28 chr4 190938510 rs115078308 C T TRUE FALSE TRUE 0 22 22 chr5 32606253 rs818113 T C FALSE TRUE TRUE 13 60 78 chr5 34927111 rs27165 A C TRUE FALSE TRUE 0 23 25 chr5 43285888 rs74549420 C T FALSE TRUE TRUE 32 1 36 chr5 140052407 rs72800920 G A TRUE FALSE TRUE 22 0 22 chr5 140052424 rs72800921 G A TRUE FALSE TRUE 29 0 29 chr6 403799 rs3778607 A G TRUE FALSE FALSE 60 132 193 chr6 412802 rs9392504 G A TRUE FALSE FALSE 143 279 422 chr6 413536 rs34069958 G A FALSE TRUE FALSE 124 36 160 chr6 29914500 rs114565502 G T TRUE FALSE FALSE 35 115 150 chr6 29914533 rs114061669 G A FALSE TRUE FALSE 108 32 140 chr6 29914767 rs114358319 T C FALSE TRUE FALSE 124 36 160 chr6 29914828 rs115470853 G T TRUE FALSE FALSE 30 95 125 chr6 29914950 rs115687202 T C TRUE FALSE FALSE 49 121 170 chr6 31234693 rs112357283 G A TRUE FALSE TRUE 32 0 40 chr6 31438243 rs114034067 G A FALSE TRUE FALSE 0 23 25 chr6 31498166 rs115566302 C T TRUE FALSE FALSE 26 0 26 chr6 32544173 rs71538600 T C FALSE TRUE TRUE 0 130 130 chr6 32544561 rs71540414 G A TRUE FALSE TRUE 207 0 209 chr6 33031103 rs116545111 A G FALSE TRUE FALSE 57 8 65 chr6 33031677 rs114987986 G A FALSE TRUE FALSE 106 35 142 chr6 33031689 rs115795025 T C FALSE TRUE FALSE 98 39 138 chr6 33031691 rs116230747 G C FALSE TRUE FALSE 99 39 139 chr6 33031767 rs115404392 G A FALSE TRUE FALSE 116 47 163 chr6 33032096 rs115655291 T C FALSE TRUE FALSE 94 31 126 chr6 33032136 rs115054587 G A FALSE TRUE FALSE 91 18 110 chr6 33032159 rs114873240 A C FALSE TRUE FALSE 93 36 129 chr6 33033738 rs114411298 C T FALSE TRUE FALSE 35 4 39 chr8 101717237 rs78407297 C T TRUE FALSE FALSE 42 0 42 chr8 101718932 rs62513920 C G TRUE FALSE FALSE 25 0 25 chr8 101730064 rs72681442 G A TRUE FALSE FALSE 37 0 37 chr8 101730073 rs72681443 T C TRUE FALSE FALSE 34 0 34 chr9 137710961 rs10745388 G A FALSE TRUE FALSE 0 34 34 chr9 137711997 rs3811146 G C FALSE TRUE FALSE 0 29 29 chr9 137712447 rs4841936 C T FALSE TRUE FALSE 1 31 32 chr9 137712874 rs7042697 T C FALSE TRUE FALSE 1 37 38 chr9 137713487 rs7357740 A T FALSE TRUE FALSE 0 27 27 chr9 139618838 rs945383 C A FALSE TRUE FALSE 0 48 49 chr10 104163834 rs10786666 G A TRUE FALSE FALSE 26 1 41 chr11 764925 rs72844779 C T TRUE FALSE TRUE 43 0 43 chr12 69204251 rs1196336 A T FALSE TRUE TRUE 0 27 27 chr12 80162188 rs34419087 G C TRUE FALSE TRUE 0 33 33 chr12 122262563 rs2596133 A C TRUE FALSE FALSE 0 26 28 chr13 41496866 rs73174887 C T FALSE TRUE TRUE 23 0 23 chr13 41496870 rs78402673 T C FALSE TRUE FALSE 23 0 23 chr14 106091947 rs114669830 C T FALSE TRUE FALSE 178 3 182 chr14 106326733 rs980847 A G FALSE TRUE FALSE 170 28 201 chr14 106328066 rs1950942 G A FALSE TRUE FALSE 276 22 301 chr14 106329270 rs72715465 A C TRUE FALSE FALSE 17 138 160 chr14 106329287 rs13379369 G A FALSE TRUE FALSE 121 14 140 chr17 33571309 rs57708672 G T TRUE FALSE FALSE 1 38 39 chr17 37360844 rs72823350 G A FALSE TRUE TRUE 43 0 43 chr17 76696995 rs116696808 T C FALSE TRUE FALSE 27 0 27 chr19 20047692 rs73008678 G A FALSE TRUE TRUE 22 0 23 chr19 53948950 rs79156327 T A TRUE FALSE FALSE 0 29 29 chr20 37048135 rs1739651 A T TRUE FALSE TRUE 0 48 48 chrX 12992884 rs75112573 T A TRUE FALSE FALSE 2 31 33 chrX 12994250 rs955279 A G TRUE FALSE FALSE 25 175 200 chrX 12995343 rs35474586 C G TRUE FALSE FALSE 31 349 381 chrX 12995544 rs36021091 A G TRUE FALSE FALSE 55 490 546 chrX 12996475 rs73184236 A G TRUE FALSE FALSE 66 457 524 chrX 46466775 rs1883255 G A FALSE TRUE FALSE 0 33 33 chrX 46467181 rs5906243 C T FALSE TRUE FALSE 0 22 22 chrX 46467279 rs5906244 C T FALSE TRUE FALSE 0 26 26 chrX 46467354 rs5906245 C T FALSE TRUE FALSE 1 27 28 chrX 46467505 rs5906246 C G FALSE TRUE FALSE 1 31 32 chrX 47510234 rs6609542 A G TRUE FALSE FALSE 66 3 69 chrX 48433499 rs2249583 C G FALSE TRUE FALSE 1 41 42 chrX 48433529 rs2249585 C T FALSE TRUE FALSE 1 36 37 chrX 48437762 rs7879722 C G TRUE FALSE FALSE 58 1 59 chrX 48437902 rs7879764 A G TRUE FALSE FALSE 64 1 65 chrX 48438379 rs235826 A G FALSE TRUE FALSE 2 58 60 chrX 64965828 rs73213355 C T TRUE FALSE FALSE 35 2 37 chrX 73039496 rs67472014 A G TRUE FALSE FALSE 3 76 79 chrX 100648854 rs73250685 A G FALSE TRUE FALSE 0 50 50 chrX 100652086 rs2515901 T C FALSE TRUE FALSE 0 84 84 chrX 118605667 rs5910593 A G FALSE TRUE FALSE 1 31 32 chrX 118919428 rs5910671 A G TRUE FALSE FALSE 30 2 32 chrX 118920809 rs7885997 C T TRUE FALSE FALSE 22 0 22 chrX 118925450 rs28384478 A G TRUE FALSE FALSE 39 1 40 chrX 128929125 rs73225588 A T TRUE FALSE FALSE 38 1 39 chrX 152959128 rs41302172 A G TRUE FALSE FALSE 0 28 28