chr pos id ref alt mat pat unphased ref alt tot chr1 17019802 rs576320 A G FALSE TRUE FALSE 4 45 49 chr1 27286934 rs146034759 C T TRUE FALSE FALSE 37 0 37 chr1 99127392 rs9728148 T C TRUE FALSE FALSE 0 24 24 chr1 120611758 rs61790276 G A FALSE TRUE FALSE 57 15 74 chr1 121137769 rs57715171 T C FALSE TRUE FALSE 36 0 36 chr1 121137928 rs28375344 T C FALSE TRUE FALSE 35 2 39 chr1 145209870 rs76440671 A G TRUE FALSE FALSE 56 7 63 chr1 149719442 rs28695431 G A FALSE TRUE FALSE 3 34 37 chr1 156392455 rs16837376 A T FALSE TRUE FALSE 37 0 37 chr1 164530130 rs3767374 A G FALSE TRUE FALSE 24 0 24 chr1 171220446 rs12758754 C T TRUE FALSE FALSE 28 0 28 chr1 178063040 rs1855174 G A FALSE TRUE FALSE 0 26 26 chr1 184009312 rs148636839 T C FALSE TRUE FALSE 29 0 30 chr1 184356050 rs143854766 G A FALSE TRUE FALSE 24 0 24 chr1 202775383 rs186433355 G A FALSE TRUE FALSE 25 0 29 chr1 205259500 rs11240406 A G TRUE FALSE FALSE 0 24 25 chr1 206680983 rs2095124 A C FALSE TRUE FALSE 0 24 25 chr1 228783243 rs6426509 T C FALSE TRUE FALSE 34 0 39 chr2 26396395 rs146666194 C G FALSE TRUE FALSE 30 0 30 chr2 27718748 rs182008826 G C TRUE FALSE FALSE 38 0 38 chr2 42274254 rs59685591 G C FALSE TRUE FALSE 36 0 36 chr2 56411817 rs35587531 C T FALSE TRUE FALSE 0 26 26 chr2 91670134 rs11690904 C T TRUE FALSE FALSE 2 51 55 chr2 91670972 rs149419363 C T FALSE TRUE FALSE 38 0 41 chr2 132795189 rs1996143 A G TRUE FALSE FALSE 0 25 35 chr2 132796380 rs1513910 C A FALSE TRUE FALSE 0 26 26 chr2 176943130 rs141368952 G C FALSE TRUE FALSE 26 0 26 chr2 185463120 rs2279266 C T FALSE TRUE FALSE 36 0 36 chr2 231902183 rs181988029 C A FALSE TRUE FALSE 28 0 40 chr3 11196516 rs4428159 G C FALSE TRUE FALSE 34 0 34 chr3 28619328 rs149648169 G T FALSE TRUE FALSE 22 0 22 chr3 122746318 rs192890122 A C FALSE TRUE FALSE 52 0 52 chr3 147123480 rs184839225 A G FALSE TRUE FALSE 28 0 28 chr3 150804397 rs184630484 G C TRUE FALSE FALSE 36 0 36 chr3 182896127 rs41319644 G A FALSE TRUE FALSE 47 0 49 chr3 185835280 rs61664655 C T TRUE FALSE FALSE 27 0 27 chr3 186625911 rs7640726 A G TRUE FALSE FALSE 0 22 22 chr4 38665818 rs113071828 G A TRUE FALSE FALSE 26 0 26 chr4 48485041 rs148894767 C T TRUE FALSE FALSE 51 0 51 chr4 81119428 rs150008640 T C FALSE TRUE FALSE 26 0 26 chr4 85419973 rs3806750 C T FALSE TRUE FALSE 0 25 25 chr4 154024722 rs12643029 G A TRUE FALSE FALSE 0 22 22 chr4 184019859 rs142302715 C T FALSE TRUE FALSE 23 0 23 chr4 184717277 rs191630021 C G TRUE FALSE FALSE 30 0 30 chr5 50261489 rs250229 C G TRUE FALSE FALSE 29 0 29 chr5 58335555 rs6450500 C T TRUE FALSE FALSE 1 49 50 chr5 72732464 rs139825349 G A FALSE TRUE FALSE 29 0 29 chr5 87972715 rs189440264 C A TRUE FALSE FALSE 35 0 35 chr5 95988787 rs4400148 T C TRUE FALSE FALSE 0 22 22 chr5 115297377 rs149327822 C A FALSE TRUE FALSE 30 0 30 chr5 127873958 rs142885655 G T TRUE FALSE FALSE 38 0 38 chr5 132947921 rs187662 C T FALSE TRUE FALSE 33 1 34 chr5 167956263 rs7446039 G A TRUE FALSE FALSE 0 22 22 chr6 7729614 rs270417 C T TRUE FALSE FALSE 0 33 33 chr6 10383566 rs489030 T C FALSE TRUE FALSE 0 27 27 chr6 29795809 rs114176519 C T FALSE TRUE FALSE 0 30 30 chr6 50810232 rs2301300 C T TRUE FALSE FALSE 24 0 24 chr6 85483423 rs115316042 G A TRUE FALSE FALSE 35 0 35 chr6 100909884 rs191648952 T C TRUE FALSE FALSE 24 0 26 chr6 108440603 rs4147327 C A FALSE TRUE FALSE 39 0 39 chr6 150286023 rs114030374 A C FALSE TRUE FALSE 61 0 61 chr7 5460550 rs79032618 C T TRUE FALSE FALSE 1 31 33 chr7 20829052 rs185813328 C A TRUE FALSE FALSE 27 0 27 chr7 45128750 rs113188984 G T FALSE TRUE FALSE 27 0 27 chr7 64974142 rs140909952 G A TRUE FALSE FALSE 33 0 39 chr7 121951470 rs145878507 C T FALSE TRUE FALSE 36 0 36 chr7 130132826 rs2301335 G A TRUE FALSE FALSE 1 27 28 chr7 139930538 rs144640376 C T TRUE FALSE FALSE 60 0 60 chr8 21906359 rs11782167 A G FALSE TRUE FALSE 0 22 22 chr8 21906403 rs11782192 A C FALSE TRUE FALSE 0 24 24 chr8 144512126 rs149797559 G A TRUE FALSE FALSE 30 0 30 chr9 113918 rs2811144 C T FALSE TRUE FALSE 31 0 33 chr9 2622121 rs12379259 A G TRUE FALSE FALSE 27 0 27 chr9 33678423 rs188876689 T C FALSE TRUE FALSE 23 0 23 chr9 66519103 rs4929095 T C FALSE TRUE FALSE 4 37 41 chr9 66519118 rs12339222 C T TRUE FALSE FALSE 34 3 38 chr9 66522866 rs4350083 T C FALSE TRUE FALSE 0 28 29 chr9 66523210 rs4093687 T C FALSE TRUE FALSE 1 31 32 chr9 66534091 rs12682862 T C TRUE FALSE FALSE 34 0 34 chr9 69198054 rs78085417 C T TRUE FALSE FALSE 1 28 29 chr9 70971798 rs2777175 T C TRUE FALSE FALSE 0 23 25 chr9 96722636 rs115050311 C G FALSE TRUE FALSE 22 0 22 chr9 98789824 rs77461159 C T FALSE TRUE FALSE 26 0 26 chr9 132199199 rs1147335 G C TRUE FALSE FALSE 0 24 24 chr10 64574571 rs10995315 G A FALSE TRUE FALSE 22 0 22 chr10 102902602 rs4919517 A C FALSE TRUE FALSE 0 22 22 chr10 123357466 rs116031375 C T FALSE TRUE FALSE 25 0 30 chr11 12696789 rs182510746 C T FALSE TRUE FALSE 28 0 29 chr11 19087414 rs2102211 A G FALSE TRUE FALSE 0 22 22 chr11 30038725 rs142803148 C A FALSE TRUE FALSE 32 0 32 chr11 32009285 rs224684 A T FALSE TRUE FALSE 0 27 27 chr11 36113666 rs4756270 C T FALSE TRUE FALSE 23 0 23 chr11 65325460 rs192543645 G A FALSE TRUE FALSE 27 0 27 chr11 66495415 rs147326358 C T FALSE TRUE FALSE 36 0 36 chr11 101981339 rs112117152 C G TRUE FALSE FALSE 26 0 26 chr11 114500908 rs79060060 T C FALSE TRUE FALSE 0 53 53 chr11 122753402 rs9943528 C G TRUE FALSE FALSE 0 29 29 chr12 5019800 rs187971825 T G TRUE FALSE FALSE 34 0 34 chr12 8851557 rs11046849 C A TRUE FALSE FALSE 0 57 57 chr12 133195311 rs6560890 A C FALSE TRUE FALSE 0 22 22 chr13 25670813 rs3002212 C T FALSE TRUE FALSE 26 0 26 chr13 27132156 rs489499 T C FALSE TRUE FALSE 0 24 24 chr13 27132361 rs116272983 G C TRUE FALSE FALSE 32 0 32 chr13 37005954 rs183114570 G T FALSE TRUE FALSE 36 0 36 chr13 100547687 rs182993334 G A FALSE TRUE FALSE 36 0 43 chr13 100620784 rs192685767 C T TRUE FALSE FALSE 23 0 23 chr13 102069173 rs141208332 G C FALSE TRUE FALSE 26 0 26 chr13 111768245 rs2482469 C G TRUE FALSE FALSE 0 25 25 chr14 21595153 rs4981356 C A FALSE TRUE FALSE 22 0 22 chr14 45381484 rs879340 G T FALSE TRUE FALSE 29 0 29 chr14 103010942 rs10137876 C G FALSE TRUE FALSE 0 32 35 chr14 106725658 rs12436700 G A FALSE TRUE FALSE 12 51 63 chr14 106726258 rs72697454 A G FALSE TRUE FALSE 7 52 59 chr14 106726273 rs72483305 C T FALSE TRUE FALSE 7 52 59 chr14 106727060 rs7141405 C T FALSE TRUE FALSE 38 5 43 chr15 93632670 rs191247676 T G TRUE FALSE FALSE 27 0 27 chr16 2246123 rs145309401 C T FALSE TRUE FALSE 24 0 24 chr16 10275698 rs2302711 C T FALSE TRUE FALSE 1 41 42 chr16 32096452 rs76880584 A G TRUE FALSE FALSE 24 0 24 chr16 32127582 rs188004943 C T FALSE TRUE FALSE 26 0 26 chr17 2756359 rs2157870 A C FALSE TRUE FALSE 0 32 32 chr17 4542548 rs11568100 C T FALSE TRUE FALSE 0 24 24 chr17 7197794 rs222859 C A FALSE TRUE FALSE 1 28 29 chr17 31255285 rs113869178 C A FALSE TRUE FALSE 33 0 34 chr17 38681847 rs190449030 A T TRUE FALSE FALSE 26 0 26 chr17 49021654 rs9909831 G A TRUE FALSE FALSE 23 0 23 chr17 66597128 rs75031273 G A TRUE FALSE FALSE 27 0 27 chr17 79448543 rs189102506 T C FALSE TRUE FALSE 24 0 24 chr18 5628414 rs1997119 T C FALSE TRUE FALSE 0 33 33 chr18 13217897 rs28435577 A G TRUE FALSE FALSE 27 0 27 chr18 18822662 rs185751142 A G FALSE TRUE FALSE 28 0 28 chr18 22928174 rs4556872 T C TRUE FALSE FALSE 22 0 22 chr18 22931873 rs187983058 C G TRUE FALSE FALSE 42 0 42 chr18 47719616 rs1790439 T C FALSE TRUE FALSE 0 36 36 chr19 1000665 rs144440136 G A FALSE TRUE FALSE 25 0 26 chr20 21488197 rs186562130 C A TRUE FALSE FALSE 24 0 25 chr22 29279493 rs188607241 G T TRUE FALSE FALSE 23 0 23 chr22 29399401 rs132564 A G FALSE TRUE FALSE 0 22 22 chr22 29712152 rs144605857 C T TRUE FALSE FALSE 35 0 35 chr22 35936868 rs13055336 C A TRUE FALSE FALSE 31 0 31 chr22 50608271 rs182420931 C A TRUE FALSE FALSE 22 0 22 chr22 50608539 rs36078816 G C TRUE FALSE FALSE 23 0 23