chr pos id ref alt mat pat unphased ref alt tot chr1 763080 rs189703925 G T TRUE FALSE FALSE 31 0 33 chr1 11968360 rs12754681 C T FALSE TRUE FALSE 1346 1096 2447 chr1 11968367 rs77029566 A G FALSE TRUE FALSE 1350 1100 2455 chr1 11968380 rs12065911 C T TRUE FALSE FALSE 1063 1306 2378 chr1 11969624 rs75455678 G A TRUE FALSE FALSE 168 37 217 chr1 17222243 rs6586522 C T TRUE FALSE FALSE 0 139 139 chr1 25360466 rs117351809 C T FALSE TRUE FALSE 29 0 29 chr1 40420878 rs186913289 C G FALSE TRUE FALSE 37 0 45 chr1 85409036 rs639500 T G TRUE FALSE FALSE 27 0 27 chr1 111434247 rs181731403 T C TRUE FALSE FALSE 22 0 22 chr1 111742841 rs12756391 A G TRUE FALSE FALSE 8 42 50 chr1 147994338 rs113050459 G A TRUE FALSE FALSE 447 2 456 chr1 147994435 rs145662697 G C FALSE TRUE FALSE 49 0 51 chr1 149514037 rs145238563 A C TRUE FALSE FALSE 0 121 134 chr1 149514257 rs192842534 G A TRUE FALSE FALSE 2 223 305 chr1 155211106 rs188978150 T C FALSE TRUE FALSE 25 0 25 chr1 160613181 rs1889792 T C FALSE TRUE FALSE 0 239 239 chr1 160669138 rs473883 A G FALSE TRUE FALSE 0 27 27 chr1 160669562 rs508055 C G TRUE FALSE FALSE 0 24 24 chr1 165667548 rs4646882 G C FALSE TRUE FALSE 0 47 47 chr1 174967398 rs183708184 T C TRUE FALSE FALSE 25 0 25 chr1 228646682 rs191958519 C A TRUE FALSE FALSE 37 0 37 chr1 231558178 rs188879504 G A FALSE TRUE FALSE 22 0 22 chr1 234745009 rs7545855 A G TRUE FALSE FALSE 32 0 32 chr2 43447595 rs934227 C G FALSE TRUE FALSE 0 33 33 chr2 61372135 rs189930627 A G FALSE TRUE FALSE 31 0 34 chr2 64881017 rs10168760 C G TRUE FALSE FALSE 0 37 37 chr2 64978567 rs186148244 C G FALSE TRUE FALSE 22 0 22 chr2 70351469 rs76970373 C A TRUE FALSE FALSE 41 0 41 chr2 114514338 rs6542171 T G FALSE TRUE FALSE 42 0 43 chr2 162101505 rs78960211 C G FALSE TRUE FALSE 24 0 24 chr3 5247587 rs145727321 C T FALSE TRUE FALSE 30 0 30 chr3 49449409 rs185825300 C A TRUE FALSE FALSE 22 0 22 chr3 57678638 chr3_57678638_57678639 T C TRUE FALSE FALSE 40 0 40 chr3 134204257 rs138676031 C T FALSE TRUE FALSE 42 0 42 chr3 149530709 rs192336430 A C TRUE FALSE FALSE 34 0 34 chr3 151988506 rs182555140 G T FALSE TRUE FALSE 43 0 43 chr3 186236833 rs1868156 T C TRUE FALSE FALSE 94 26 120 chr3 192635241 rs67241930 C T TRUE FALSE FALSE 28 2 30 chr3 194868169 rs7646496 A G FALSE TRUE FALSE 0 29 29 chr4 37893038 rs10008243 C T TRUE FALSE FALSE 0 21 21 chr4 56412169 rs12505266 C T TRUE FALSE FALSE 0 36 36 chr4 88141713 rs7666055 G A TRUE FALSE FALSE 23 0 23 chr4 174250383 rs6856630 G T FALSE TRUE FALSE 0 29 44 chr4 186316669 rs193064722 A C FALSE TRUE FALSE 34 0 34 chr5 1345474 rs27996 A G TRUE FALSE FALSE 24 0 24 chr5 71403273 rs3112401 T C FALSE TRUE FALSE 27 0 27 chr5 111093311 rs3733994 C A TRUE FALSE FALSE 48 0 48 chr5 127419563 rs192047060 T G FALSE TRUE FALSE 88 0 88 chr5 139554648 rs17523256 G A FALSE TRUE FALSE 29 0 29 chr5 159902313 rs17057846 G A TRUE FALSE FALSE 11 57 68 chr6 291291 rs57104142 G A TRUE FALSE FALSE 18 134 153 chr6 291634 rs9503163 C T TRUE FALSE FALSE 18 114 134 chr6 291833 rs117996017 C T FALSE TRUE FALSE 117 4 128 chr6 292042 rs117766562 C G TRUE FALSE FALSE 9 87 100 chr6 292796 rs3734780 C A FALSE TRUE FALSE 5 78 84 chr6 293332 rs7767281 G T TRUE FALSE FALSE 114 4 118 chr6 295766 rs12662831 C G TRUE FALSE FALSE 3 32 37 chr6 2869241 rs183261446 G A TRUE FALSE FALSE 29 0 33 chr6 12012070 rs113576155 C G TRUE FALSE FALSE 28 0 28 chr6 26054010 rs188628636 G T TRUE FALSE FALSE 50 0 50 chr6 30706886 rs147510149 A G TRUE FALSE FALSE 34 0 34 chr6 31165218 rs147830070 C T FALSE TRUE FALSE 21 0 21 chr6 31324004 rs2523600 C G TRUE FALSE FALSE 43 1 46 chr6 31324051 rs41551018 C A FALSE TRUE FALSE 7 46 53 chr6 31324064 rs41541519 T A FALSE TRUE FALSE 4 41 45 chr6 31324086 rs148579231 G C TRUE FALSE FALSE 41 7 48 chr6 31324100 rs148203517 G T TRUE FALSE FALSE 42 6 48 chr6 31324176 rs141019215 C G TRUE FALSE FALSE 33 0 33 chr6 31324194 rs3179865 G A TRUE FALSE FALSE 32 0 32 chr6 31324208 rs12721829 G T TRUE FALSE FALSE 32 0 32 chr6 31324210 rs12721827 G A TRUE FALSE FALSE 30 0 30 chr6 32497975 rs114195860 A G TRUE FALSE FALSE 30 2 32 chr6 32543555 rs112213744 T C TRUE FALSE FALSE 0 25 25 chr6 32543570 rs41294267 G A FALSE TRUE FALSE 31 1 32 chr6 32543575 rs41294271 C T FALSE TRUE FALSE 33 1 34 chr6 32543584 rs41294275 G A FALSE TRUE FALSE 33 1 34 chr6 32543595 rs34373847 G A FALSE TRUE FALSE 32 1 33 chr6 32543626 rs144774272 A G TRUE FALSE FALSE 1 33 34 chr6 32543631 rs34943833 A G FALSE TRUE FALSE 31 1 32 chr6 32543687 rs9269526 G T TRUE FALSE FALSE 1 36 37 chr6 32543784 rs35083835 G T FALSE TRUE FALSE 44 0 44 chr6 32543791 rs34875013 T C FALSE TRUE FALSE 44 0 44 chr6 32543794 rs36103258 G T FALSE TRUE FALSE 44 0 44 chr6 32543802 rs35011765 A G FALSE TRUE FALSE 43 0 43 chr6 32543803 rs35712293 C T FALSE TRUE FALSE 44 0 44 chr6 32543812 rs34960539 C T FALSE TRUE FALSE 46 0 46 chr6 32543894 rs41284611 T C FALSE TRUE FALSE 68 0 68 chr6 32543923 rs9269536 C T TRUE FALSE FALSE 0 73 73 chr6 32543946 rs9269538 A G TRUE FALSE FALSE 0 60 60 chr6 32544082 rs35581965 T C FALSE TRUE FALSE 58 0 58 chr6 32544262 rs34206909 T A FALSE TRUE FALSE 21 0 21 chr6 32544266 rs35539497 T C FALSE TRUE FALSE 21 0 21 chr6 32548359 rs28732269 T C TRUE FALSE FALSE 40 0 40 chr6 32548386 rs28732271 A T TRUE FALSE FALSE 35 0 35 chr6 32548403 rs28732275 G A TRUE FALSE FALSE 33 0 33 chr6 32556858 rs4713551 G C FALSE TRUE FALSE 0 38 38 chr6 32556870 rs28724227 A G TRUE FALSE FALSE 42 0 42 chr6 32593453 rs9271717 A G TRUE FALSE FALSE 23 0 23 chr6 32594441 rs113414682 A G FALSE TRUE FALSE 0 26 26 chr6 32595060 rs113112165 A G TRUE FALSE FALSE 28 0 28 chr6 32595097 rs112526259 C A FALSE TRUE FALSE 0 29 29 chr6 32595117 rs111941374 C T FALSE TRUE FALSE 0 24 24 chr6 32595147 rs111527880 C T TRUE FALSE FALSE 21 0 21 chr6 32604718 rs9272378 A G FALSE TRUE FALSE 0 21 21 chr6 32604763 rs9272385 T C FALSE TRUE FALSE 0 22 22 chr6 32606217 rs9272498 G A FALSE TRUE FALSE 22 72 94 chr6 32606711 rs9272534 C T TRUE FALSE FALSE 33 3 36 chr6 32606732 rs28383357 G A FALSE TRUE FALSE 3 34 37 chr6 32606756 rs74223436 G A TRUE FALSE FALSE 43 7 50 chr6 32606773 rs9272536 G T TRUE FALSE FALSE 44 9 53 chr6 32608856 rs28383431 T C FALSE TRUE FALSE 59 15 74 chr6 32608858 rs4455710 C T TRUE FALSE FALSE 15 58 73 chr6 35888835 chr6_35888835_35888836 G C TRUE FALSE FALSE 21 0 24 chr6 36410801 rs2273883 C A TRUE FALSE FALSE 33 0 34 chr6 76458773 rs150005514 G T TRUE FALSE FALSE 31 0 31 chr6 82958246 rs9294254 A G TRUE FALSE FALSE 28 2 30 chr6 109776732 rs141198889 C A TRUE FALSE FALSE 40 0 45 chr6 114187584 rs149671040 G A FALSE TRUE FALSE 24 0 25 chr6 116575276 rs2232466 T G TRUE FALSE FALSE 44 0 55 chr6 118973137 rs6913012 G A FALSE TRUE FALSE 21 0 21 chr6 137113479 rs146117294 C A TRUE FALSE FALSE 25 0 25 chr6 151712279 rs12528339 C T TRUE FALSE FALSE 29 0 29 chr6 158897044 rs140479068 C A FALSE TRUE FALSE 28 0 28 chr7 1067906 rs2362529 T C TRUE FALSE FALSE 0 22 23 chr7 5733986 rs143035647 G C TRUE FALSE FALSE 97 0 98 chr7 6616868 rs186195213 T C FALSE TRUE FALSE 21 0 22 chr7 8008740 rs185784762 G C TRUE FALSE FALSE 36 0 39 chr7 22893795 rs11983782 C G FALSE TRUE FALSE 0 32 33 chr7 22898240 rs187313169 A G TRUE FALSE FALSE 22 0 22 chr7 26227484 rs141217162 C T TRUE FALSE FALSE 114 0 119 chr7 27779854 rs17155736 A G TRUE FALSE FALSE 29 0 34 chr7 30066957 rs62446671 C G FALSE TRUE FALSE 52 0 52 chr7 129251525 rs6951327 C T FALSE TRUE FALSE 41 0 44 chr7 134872737 rs77749990 C T FALSE TRUE FALSE 25 1 26 chr7 155089344 rs75753237 T C FALSE TRUE FALSE 45 0 45 chr7 156685889 rs186175678 G A TRUE FALSE FALSE 21 0 21 chr8 11659703 rs12056541 T C TRUE FALSE FALSE 0 25 25 chr8 61564647 rs687351 A C FALSE TRUE FALSE 0 35 40 chr8 91658068 rs139543950 C G FALSE TRUE FALSE 31 0 31 chr8 101514260 rs10091857 G A TRUE FALSE FALSE 0 22 23 chr9 6008826 rs186913 T C TRUE FALSE FALSE 33 0 33 chr9 6681507 rs75816450 G A FALSE TRUE FALSE 165 0 165 chr9 33920381 rs117077154 G A FALSE TRUE FALSE 22 0 22 chr9 41954776 rs28706047 C G TRUE FALSE FALSE 0 22 22 chr9 69065535 rs79836909 C A FALSE TRUE FALSE 0 57 57 chr9 96928812 rs10821310 C T FALSE TRUE FALSE 39 0 54 chr9 115480089 rs190563747 T G TRUE FALSE FALSE 24 0 24 chr9 130661758 rs190542748 T C FALSE TRUE FALSE 0 23 23 chr10 1084324 rs79140329 G T TRUE FALSE FALSE 44 0 44 chr10 3214942 rs11818724 T C FALSE TRUE FALSE 61 0 86 chr10 6205875 rs611835 A G TRUE FALSE FALSE 21 0 21 chr10 17270964 rs191083059 C T FALSE TRUE FALSE 29 0 29 chr10 23728470 rs147006133 C T TRUE FALSE FALSE 21 0 21 chr10 27445123 rs3758404 C G FALSE TRUE FALSE 2 30 33 chr10 46222489 rs10900236 C G TRUE FALSE FALSE 0 23 24 chr10 74086604 rs111635354 T A FALSE TRUE FALSE 13 75 88 chr10 74086652 rs9415063 C T FALSE TRUE FALSE 10 65 76 chr10 104953021 rs111622998 C A FALSE TRUE FALSE 25 0 27 chr10 112632682 rs184128659 G T TRUE FALSE FALSE 44 0 45 chr11 59578473 rs7934397 A T TRUE FALSE FALSE 22 0 22 chr11 62380027 rs113222038 C T FALSE TRUE FALSE 25 0 25 chr11 62608677 rs475417 C T TRUE FALSE FALSE 0 1421 1421 chr11 65355690 rs141095307 C T FALSE TRUE FALSE 21 0 31 chr11 102188551 rs180718216 G A TRUE FALSE FALSE 55 0 56 chr12 9102925 rs10842598 A C TRUE FALSE FALSE 29 0 30 chr12 12713888 rs190506854 A C TRUE FALSE FALSE 31 3 37 chr12 44229868 rs111594672 T C FALSE TRUE FALSE 22 0 22 chr12 46604557 rs12828089 C A TRUE FALSE FALSE 0 21 21 chr12 90103082 rs139420030 G T FALSE TRUE FALSE 28 0 32 chr12 95867972 chr12_95867972_95867973 A G TRUE FALSE FALSE 71 0 71 chr12 96794116 rs11537648 T A FALSE TRUE FALSE 33 0 33 chr12 112841242 rs7972529 T G FALSE TRUE FALSE 0 41 41 chr13 41707272 rs9566704 A G TRUE FALSE FALSE 0 30 30 chr14 34388851 rs78368304 C T FALSE TRUE FALSE 0 23 23 chr14 60716016 rs2031628 C G TRUE FALSE FALSE 0 41 42 chr14 64969608 rs186485523 A G FALSE TRUE FALSE 22 0 23 chr14 81686608 rs189178521 A G FALSE TRUE FALSE 23 0 23 chr14 106316095 rs74201417 A C TRUE FALSE FALSE 28 0 28 chr14 106318248 rs1059713 A T TRUE FALSE FALSE 155 40 195 chr14 106318342 rs2256593 T C FALSE TRUE FALSE 32 182 214 chr14 106318914 rs76084563 C T TRUE FALSE FALSE 162 48 210 chr14 106320092 rs2256346 C T FALSE TRUE FALSE 37 148 186 chr14 106321913 rs1136534 G A FALSE TRUE FALSE 13 59 72 chr14 106322388 rs2753506 G A FALSE TRUE FALSE 9 49 92 chr14 106383567 rs2857337 A G TRUE FALSE FALSE 1 28 29 chr14 106383920 rs186450714 G A TRUE FALSE FALSE 25 0 25 chr14 106393467 rs76915552 C T TRUE FALSE FALSE 0 36 36 chr14 106393671 rs61996964 C T TRUE FALSE FALSE 1 28 29 chr14 106394050 rs75138315 C T FALSE TRUE FALSE 0 26 36 chr14 107014596 rs2583350 T C TRUE FALSE FALSE 60 0 60 chr14 107015410 rs7142635 C A FALSE TRUE FALSE 0 41 41 chr15 50979126 rs8182079 G C FALSE TRUE FALSE 35 0 35 chr15 52472416 rs113073522 G T FALSE TRUE FALSE 21 0 21 chr15 93426249 rs184842620 A G TRUE FALSE FALSE 47 1 48 chr16 2186357 rs154653 A G FALSE TRUE FALSE 1 43 44 chr16 2301272 rs55985840 G T TRUE FALSE FALSE 40 0 42 chr16 2318070 rs187480317 G A FALSE TRUE FALSE 85 0 93 chr16 3493288 rs34496784 T C TRUE FALSE FALSE 27 0 27 chr16 3493301 rs7500590 T C TRUE FALSE FALSE 28 0 28 chr16 25269014 rs12927671 G C FALSE TRUE FALSE 0 69 69 chr16 77225001 rs2232499 C G TRUE FALSE FALSE 32 0 36 chr16 84633502 rs186820351 A G TRUE FALSE FALSE 46 0 46 chr17 1552171 rs76453306 C T FALSE TRUE FALSE 21 0 27 chr17 4853669 rs183266762 A C FALSE TRUE FALSE 58 0 58 chr17 5286226 rs1058366 A C FALSE TRUE FALSE 0 21 21 chr17 7746380 rs139305098 A C TRUE FALSE FALSE 44 0 44 chr17 18585607 rs143979093 T C FALSE TRUE FALSE 0 22 22 chr17 25783581 rs187761636 G T TRUE FALSE FALSE 37 0 37 chr17 25783584 rs112995015 C T FALSE TRUE FALSE 0 34 34 chr17 25783681 rs1829803 A G FALSE TRUE FALSE 0 21 22 chr17 30669055 rs116565498 C G FALSE TRUE FALSE 25 0 25 chr17 34414635 rs2188973 A G FALSE TRUE FALSE 326 146 472 chr17 34414636 rs2188974 A G FALSE TRUE FALSE 325 145 470 chr17 34414914 rs1719126 T C FALSE TRUE FALSE 339 146 485 chr17 41393247 rs74597067 T A TRUE FALSE FALSE 472 326 800 chr17 41393260 rs35312672 G A TRUE FALSE FALSE 512 358 872 chr17 41393275 rs2171462 C A TRUE FALSE FALSE 537 369 909 chr17 41393295 rs17600502 T C TRUE FALSE FALSE 563 356 921 chr17 41393438 rs1386749 G A TRUE FALSE FALSE 554 173 730 chr17 41393440 rs113613557 T C TRUE FALSE FALSE 557 167 726 chr17 41437398 rs9891977 A G TRUE FALSE FALSE 25 0 25 chr17 41437430 rs67532907 T C TRUE FALSE FALSE 33 0 33 chr17 41437547 rs4792988 T C TRUE FALSE FALSE 35 1 36 chr17 41437552 rs4792989 T C TRUE FALSE FALSE 38 1 39 chr17 56736459 rs191825334 T C FALSE TRUE FALSE 538 50 589 chr17 56736473 rs654778 A C FALSE TRUE FALSE 559 95 655 chr17 56736659 rs368186 A G FALSE TRUE FALSE 469 257 726 chr17 62915614 rs142758836 A T FALSE TRUE FALSE 31 3 35 chr17 62915775 rs112968726 C T FALSE TRUE FALSE 43 7 50 chr17 70423133 rs146273379 G A TRUE FALSE FALSE 40 0 40 chr17 73452529 rs9892171 C T TRUE FALSE FALSE 0 32 32 chr17 76125018 rs186181929 G A FALSE TRUE FALSE 50 0 58 chr18 48405489 rs1510394 T A TRUE FALSE FALSE 0 33 33 chr19 10387386 rs182244320 G A TRUE FALSE FALSE 40 0 40 chr19 13273992 rs745582 G C FALSE TRUE FALSE 29 0 29 chr19 32896308 rs182255486 C T TRUE FALSE FALSE 28 0 28 chr19 36209073 rs189776176 T G TRUE FALSE FALSE 82 0 82 chr19 45596460 rs146080358 C G TRUE FALSE FALSE 29 0 29 chr20 18488569 rs183263921 A G TRUE FALSE FALSE 27 0 38 chr20 18568744 rs146497662 C T FALSE TRUE FALSE 35 0 35 chr20 18568918 rs6075372 A G TRUE FALSE FALSE 0 33 33 chr20 33865899 rs12481346 T C TRUE FALSE FALSE 47 0 47 chr20 47804780 rs187514950 A G FALSE TRUE FALSE 26 0 26 chr21 45564190 rs2838494 A G TRUE FALSE FALSE 0 44 50 chr21 46238151 rs663223 T G FALSE TRUE FALSE 0 30 30 chr22 38794860 rs184673388 G T FALSE TRUE FALSE 42 0 42 chr22 42322482 rs193288165 T G TRUE FALSE FALSE 23 0 23 chrX 23801593 rs3764885 A G FALSE TRUE FALSE 31 98 129 chrX 118812573 rs190434922 C T FALSE TRUE FALSE 21 0 27 chrX 153626649 rs915941 A C FALSE TRUE FALSE 73 145 218