chr pos id ref alt mat pat unphased ref alt tot chr1 7887248 rs2859387 G A FALSE TRUE FALSE 0 33 34 chr1 36488956 rs619666 C T TRUE FALSE TRUE 2 34 38 chr1 44938562 rs72895508 T C TRUE FALSE FALSE 1 26 27 chr1 145092729 rs2596316 T A TRUE FALSE TRUE 32 3 35 chr1 204381291 rs5007569 G A FALSE TRUE FALSE 0 58 72 chr1 224528843 rs73121816 C T FALSE TRUE FALSE 29 1 30 chr1 248646050 rs28703643 C G TRUE FALSE TRUE 2 39 50 chr2 37762760 rs4538180 T C TRUE FALSE FALSE 35 2 37 chr2 37911426 rs34873654 A G FALSE TRUE FALSE 2 30 32 chr2 37995532 rs76614098 C T TRUE FALSE FALSE 28 1 30 chr2 37995559 rs76592379 T C TRUE FALSE FALSE 24 0 25 chr2 38060583 rs1430014 T G TRUE FALSE FALSE 38 1 40 chr2 38060635 rs1430015 G C TRUE FALSE FALSE 35 0 36 chr2 38060651 rs1430017 C A TRUE FALSE FALSE 38 0 39 chr2 38060893 rs13031750 T C TRUE FALSE FALSE 25 0 25 chr2 38060912 rs12712556 C T TRUE FALSE FALSE 32 0 32 chr2 65030157 rs13426045 A G FALSE TRUE FALSE 0 22 22 chr2 108888399 rs72941127 C G TRUE FALSE FALSE 34 1 35 chr2 114341074 rs2418687 C T FALSE TRUE FALSE 75 13 90 chr2 120991570 rs35434189 C T FALSE TRUE FALSE 0 22 22 chr2 133049366 rs4063324 T C FALSE TRUE TRUE 27 0 28 chr2 133058176 rs2369173 A G FALSE TRUE TRUE 30 2 38 chr2 133058448 rs2677636 T G TRUE FALSE TRUE 91 4 103 chr2 178499240 rs11682717 C G FALSE TRUE FALSE 2 33 36 chr2 234776752 rs13390675 G C TRUE FALSE FALSE 11 50 61 chr3 534058 rs9854339 T C FALSE TRUE FALSE 3 36 39 chr4 2284158 rs6819161 G A TRUE FALSE FALSE 6 39 45 chr4 39038665 rs6819988 C T FALSE TRUE FALSE 33 1 34 chr4 39038687 rs2566098 A C FALSE TRUE FALSE 34 4 38 chr4 165877722 rs57190494 T A TRUE FALSE FALSE 10 49 60 chr4 165899171 rs73001978 C A FALSE TRUE FALSE 60 4 66 chr4 190862376 rs75907369 G A FALSE TRUE TRUE 49 4 60 chr4 190862517 rs72722546 G T FALSE TRUE TRUE 41 0 45 chr4 190862626 rs114131422 T G FALSE TRUE TRUE 30 0 30 chr4 190862637 rs115909723 C G FALSE TRUE TRUE 28 0 28 chr5 79512483 rs1549127 T G TRUE FALSE FALSE 2 28 38 chr5 79512502 rs7705992 A G TRUE FALSE TRUE 2 29 41 chr5 102898203 rs3797900 G A TRUE FALSE FALSE 35 3 39 chr5 171627695 rs77598074 A G TRUE FALSE FALSE 26 1 28 chr5 171627701 rs17074425 G A TRUE FALSE FALSE 25 1 26 chr6 6659352 rs12209884 G C FALSE TRUE FALSE 36 3 42 chr6 16583531 rs60261388 C T FALSE TRUE FALSE 2 28 30 chr6 26987900 rs9379952 A T TRUE FALSE FALSE 2 29 31 chr6 32536650 rs67704526 C T FALSE TRUE FALSE 22 0 22 chr6 32601769 rs116451903 G T FALSE TRUE FALSE 34 4 38 chr6 32601933 rs116145962 C T FALSE TRUE FALSE 39 4 43 chr6 32602096 rs114230551 G A FALSE TRUE FALSE 30 0 30 chr6 32602105 rs115146228 G T FALSE TRUE FALSE 31 0 32 chr6 32602131 rs116105952 A G FALSE TRUE FALSE 30 0 30 chr6 32602169 rs116714120 C T FALSE TRUE FALSE 27 1 28 chr6 32659107 rs114365225 G A TRUE FALSE FALSE 28 1 29 chr6 32671728 rs114976023 T C TRUE FALSE FALSE 39 5 54 chr6 89271441 rs113018706 G A TRUE FALSE FALSE 44 6 50 chr6 125623274 rs62432878 C T FALSE TRUE FALSE 0 23 23 chr6 132935865 rs7741930 G A TRUE FALSE TRUE 11 53 65 chr6 170054367 rs4716337 G C FALSE TRUE FALSE 1 26 27 chr6 170589803 rs9356632 G A FALSE TRUE TRUE 8 44 53 chr6 170589989 rs2180052 G A FALSE TRUE FALSE 6 40 47 chr7 5553845 rs73045175 T A FALSE TRUE FALSE 39 4 44 chr7 22186955 rs6461639 T C FALSE TRUE FALSE 40 1 41 chr7 47189519 rs1438604 C G TRUE FALSE FALSE 2 28 30 chr7 129694023 rs73481718 A G TRUE FALSE FALSE 38 2 40 chr7 141675813 rs73540589 T C FALSE TRUE FALSE 9 44 54 chr7 143543854 rs112756588 G A FALSE TRUE FALSE 33 3 36 chr8 8646633 rs10094270 G A FALSE TRUE FALSE 0 21 21 chr8 8646800 rs73517939 C T FALSE TRUE TRUE 0 31 31 chr8 8646974 rs66618176 G C FALSE TRUE FALSE 0 23 24 chr8 23410575 rs73555545 T C FALSE TRUE FALSE 22 0 22 chr8 61048380 rs16925806 T C TRUE FALSE FALSE 1 35 36 chr8 99305363 rs7461545 G A FALSE TRUE FALSE 52 7 59 chr8 99305634 rs57251745 T G TRUE FALSE FALSE 16 62 78 chr8 145639320 rs736676 G C TRUE FALSE TRUE 0 21 21 chr9 6080298 rs10815349 G A FALSE TRUE FALSE 3 38 41 chr9 31211389 rs73445366 T C TRUE FALSE FALSE 36 1 37 chr9 31211857 rs58781791 A G TRUE FALSE FALSE 23 0 23 chr9 75768163 rs60403232 G C FALSE TRUE FALSE 5 38 43 chr9 79502855 rs73462362 C T TRUE FALSE FALSE 41 5 46 chr9 101776181 rs73503733 T C TRUE FALSE FALSE 2 31 33 chr9 108424603 rs72730808 C A FALSE TRUE TRUE 46 0 46 chr9 114700626 rs73532809 G T TRUE FALSE FALSE 38 6 45 chr10 4001748 rs4607962 A G TRUE FALSE FALSE 0 28 28 chr10 30843473 rs2292193 T C TRUE FALSE FALSE 3 43 46 chr10 46206307 rs116199003 T C FALSE TRUE FALSE 46 1 47 chr10 46206324 rs114410128 C T FALSE TRUE FALSE 48 1 49 chr10 73946506 rs7088071 A T TRUE FALSE FALSE 1 32 34 chr11 2721568 rs11023840 T C FALSE TRUE TRUE 24 0 24 chr11 6947454 rs73397502 G A FALSE TRUE FALSE 52 6 58 chr11 19302422 rs1106705 A G TRUE FALSE FALSE 34 3 37 chr11 75293939 rs629753 G C TRUE FALSE FALSE 3 34 38 chr11 104789506 rs632806 C T FALSE TRUE FALSE 29 1 31 chr11 113185591 rs12282421 C T FALSE TRUE FALSE 41 4 45 chr11 124706349 rs12281572 A G FALSE TRUE FALSE 1 64 66 chr11 124706431 rs12275459 T A FALSE TRUE FALSE 2 51 54 chr12 9472619 rs11050218 G A TRUE FALSE FALSE 1 29 30 chr12 27295997 rs73076901 C T FALSE TRUE TRUE 25 0 25 chr12 27296001 rs73076902 A G FALSE TRUE TRUE 26 0 26 chr12 54867251 rs7135745 T A TRUE FALSE TRUE 1 26 40 chr12 54867641 rs7136235 T C FALSE TRUE TRUE 0 27 27 chr12 133022817 rs56351945 A C FALSE TRUE FALSE 0 22 22 chr13 20695299 rs1977284 A G TRUE FALSE FALSE 38 2 41 chr13 33527529 rs7329918 T C TRUE FALSE FALSE 0 23 23 chr13 33781514 rs2555591 C T FALSE TRUE TRUE 27 1 30 chr13 34211471 rs9569943 C T FALSE TRUE FALSE 25 1 26 chr13 113585380 rs6577018 G A TRUE FALSE FALSE 0 35 38 chr13 113585588 rs59913857 G T FALSE TRUE FALSE 34 1 35 chr13 113585660 rs73572857 C T TRUE FALSE FALSE 2 29 31 chr14 23182066 rs56377239 G T FALSE TRUE FALSE 25 81 106 chr14 62068895 rs17098930 G A TRUE FALSE FALSE 1 42 43 chr14 78108605 rs76288445 G A FALSE TRUE FALSE 34 3 38 chr14 106804915 rs7156130 G C TRUE FALSE FALSE 9 54 63 chr14 107154000 rs34845568 A G FALSE TRUE TRUE 40 4 44 chr14 107177331 rs2904616 T G FALSE TRUE TRUE 37 5 66 chr14 107178348 rs74091551 C T TRUE FALSE FALSE 25 0 28 chr15 25200303 rs220029 G A FALSE TRUE FALSE 0 26 26 chr15 25201654 rs115648083 C T FALSE TRUE FALSE 1 28 30 chr15 68155609 rs73433821 T G FALSE TRUE FALSE 48 11 59 chr15 99409548 rs2684781 C T FALSE TRUE TRUE 51 2 53 chr16 3493102 rs13332163 A C TRUE FALSE FALSE 0 23 23 chr16 3493240 rs3816916 A C FALSE TRUE FALSE 25 1 26 chr16 3493288 rs34496784 T C FALSE TRUE FALSE 26 1 27 chr16 3493301 rs7500590 T C FALSE TRUE FALSE 29 1 30 chr16 9171386 rs73508752 C G TRUE FALSE FALSE 25 1 26 chr16 47813779 rs28497443 A C FALSE TRUE FALSE 40 3 44 chr16 75174580 rs11639930 G A TRUE FALSE FALSE 36 0 36 chr16 75174965 rs11640433 C T TRUE FALSE FALSE 31 3 35 chr16 82044810 rs113145042 G A FALSE TRUE FALSE 40 4 44 chr16 82045227 rs13334514 T C FALSE TRUE TRUE 47 4 51 chr17 19734715 rs395130 A G TRUE FALSE FALSE 2 32 35 chr17 70517178 rs73353547 A G FALSE TRUE FALSE 66 18 85 chr18 12884894 rs73406791 C T FALSE TRUE FALSE 35 4 39 chr18 77905521 rs12957363 A G FALSE TRUE FALSE 0 25 25 chr18 77905575 rs8088376 T C FALSE TRUE FALSE 0 39 40 chr18 77906500 rs1050919 C T FALSE TRUE FALSE 1 28 29 chr19 37825633 rs10404602 A T FALSE TRUE FALSE 40 1 41 chr19 42007042 rs10425322 C A FALSE TRUE FALSE 22 0 22 chr19 44905740 rs73041708 G A TRUE FALSE FALSE 51 0 51 chr19 54023581 rs113847365 G A FALSE TRUE FALSE 2 29 31 chr19 54040412 rs8105445 A G FALSE TRUE FALSE 0 22 22 chr19 54040532 rs8105870 G C FALSE TRUE FALSE 0 38 38 chr19 54040613 rs10412226 C T FALSE TRUE FALSE 0 35 35 chr19 54040750 rs13344121 G T FALSE TRUE FALSE 2 44 46 chr19 54041242 rs58777975 G A FALSE TRUE FALSE 0 43 43 chr19 58281398 rs74734675 A G FALSE TRUE TRUE 29 0 29 chr20 29611451 rs112472840 A G TRUE FALSE TRUE 43 0 44 chr20 29611563 rs114670834 G C TRUE FALSE TRUE 26 0 26 chr20 29611654 rs116041563 A G TRUE FALSE TRUE 24 0 26 chr20 29612083 rs115689837 C T TRUE FALSE TRUE 26 1 28 chr20 42450753 rs61121447 C T TRUE FALSE FALSE 0 24 24 chr20 52484310 rs77378090 T A FALSE TRUE TRUE 99 2 101 chr20 57426449 rs6100252 G T TRUE FALSE FALSE 29 0 29 chr20 57426528 rs6026560 T C TRUE FALSE FALSE 24 0 25 chr21 35799449 rs73357590 T C FALSE TRUE TRUE 0 23 23 chr21 40757887 rs2299739 G A TRUE FALSE FALSE 23 0 23 chr21 40758083 rs59880434 T C FALSE TRUE FALSE 2 56 58 chrX 9247126 rs2070 G A TRUE FALSE FALSE 0 27 27 chrX 9247167 rs5979070 T C TRUE FALSE FALSE 0 37 39 chrX 9247244 rs61355745 T C TRUE FALSE FALSE 0 29 29 chrX 13437835 rs4830859 G C TRUE FALSE FALSE 0 37 37 chrX 13437921 rs4830860 G C TRUE FALSE FALSE 1 34 35 chrX 13438808 rs5979868 T A TRUE FALSE FALSE 1 25 26 chrX 13870476 rs5979987 C T FALSE TRUE FALSE 21 0 21 chrX 15354310 rs6527494 A G FALSE TRUE FALSE 49 1 51 chrX 15755848 rs5936035 G A TRUE FALSE FALSE 5 37 42 chrX 20393395 rs5950304 T C TRUE FALSE FALSE 0 30 30 chrX 23685022 rs525443 C T FALSE TRUE FALSE 46 2 48 chrX 23761122 rs3764883 A C TRUE FALSE FALSE 0 33 33 chrX 23971483 rs2023680 T A FALSE TRUE FALSE 34 1 35 chrX 24482888 rs11094967 A C TRUE FALSE FALSE 0 43 43 chrX 24482958 rs7889665 C T TRUE FALSE FALSE 0 40 40 chrX 24483060 rs12556785 A C TRUE FALSE FALSE 1 53 54 chrX 24483943 rs7877946 G C TRUE FALSE FALSE 0 21 22 chrX 30670658 rs11095189 G A FALSE TRUE FALSE 52 2 54 chrX 30908032 rs73454190 C G FALSE TRUE FALSE 59 2 61 chrX 30908039 rs73454192 T C TRUE FALSE FALSE 3 56 59 chrX 37707140 rs73473925 G A FALSE TRUE FALSE 75 1 76 chrX 38119855 rs111980395 T G FALSE TRUE FALSE 22 0 22 chrX 40429910 rs884563 A G FALSE TRUE FALSE 24 0 24 chrX 40856473 rs7062915 G A FALSE TRUE FALSE 27 1 29 chrX 40856785 rs73476590 C G TRUE FALSE FALSE 1 67 68 chrX 40869398 rs73476595 G A FALSE TRUE FALSE 50 3 53 chrX 40869633 rs4827249 C T FALSE TRUE FALSE 40 3 43 chrX 41308675 rs3013126 T C FALSE TRUE FALSE 25 1 26 chrX 47221321 rs73488198 C T TRUE FALSE FALSE 3 39 42 chrX 47341780 rs5905609 T C FALSE TRUE FALSE 31 2 34 chrX 47341821 rs2071780 A G FALSE TRUE FALSE 30 1 31 chrX 47415857 rs5906428 A G TRUE FALSE FALSE 1 28 29 chrX 47419633 rs73494399 A G TRUE FALSE FALSE 1 32 33 chrX 48432463 rs10156915 G A TRUE FALSE FALSE 0 29 29 chrX 48456223 rs235824 G T TRUE FALSE FALSE 3 31 36 chrX 49968813 rs73493784 C T TRUE FALSE FALSE 1 50 51 chrX 49969645 rs73211760 T C FALSE TRUE FALSE 38 0 45 chrX 49969770 rs67671217 T G TRUE FALSE TRUE 32 0 39 chrX 54555716 rs3827432 A G FALSE TRUE FALSE 24 0 24 chrX 54665735 rs5960325 T C FALSE TRUE FALSE 37 1 39 chrX 54834957 rs743974 A C TRUE FALSE FALSE 0 53 53 chrX 55188020 rs2291684 T C TRUE FALSE FALSE 1 38 39 chrX 55743938 rs12833543 G C TRUE FALSE FALSE 0 39 39 chrX 56755141 rs1927221 A G TRUE FALSE FALSE 1 30 31 chrX 57937402 rs5988686 G C FALSE TRUE FALSE 45 1 46 chrX 63426618 rs73516474 G T TRUE FALSE FALSE 0 36 36 chrX 68385673 rs73634162 C G TRUE FALSE FALSE 1 51 53 chrX 68385863 rs17302682 C T TRUE FALSE FALSE 0 24 24 chrX 70338399 rs11796153 A G TRUE FALSE FALSE 1 26 27 chrX 71459082 rs17302362 A G TRUE FALSE FALSE 0 22 23 chrX 71459287 rs2984353 C A TRUE FALSE FALSE 1 26 27 chrX 71459329 rs3012647 T C TRUE FALSE FALSE 0 22 22 chrX 72782622 rs1572276 G A FALSE TRUE FALSE 69 1 71 chrX 73512695 rs174139 A G FALSE TRUE FALSE 44 2 46 chrX 73513007 rs174138 C T FALSE TRUE FALSE 42 1 43 chrX 74494470 rs4892396 T G FALSE TRUE FALSE 35 2 37 chrX 75392144 rs1024502 C G TRUE FALSE FALSE 1 31 33 chrX 80063351 rs73504642 G A TRUE FALSE FALSE 1 25 26 chrX 85301780 rs61371537 G A TRUE FALSE FALSE 2 29 32 chrX 95941463 rs73547711 T C TRUE FALSE FALSE 1 36 37 chrX 100307442 rs111805145 T A FALSE TRUE FALSE 50 3 53 chrX 100307550 rs5967235 T A FALSE TRUE FALSE 27 1 28 chrX 100307655 rs7882982 G T TRUE FALSE FALSE 0 28 28 chrX 100645559 rs3027598 T C TRUE FALSE FALSE 0 40 40 chrX 100673358 rs61732101 G T TRUE FALSE FALSE 2 54 56 chrX 100673943 rs5991935 G A FALSE TRUE FALSE 28 0 30 chrX 101054883 rs6616291 G A TRUE FALSE FALSE 4 48 53 chrX 101914813 rs16984129 A G TRUE FALSE FALSE 1 25 26 chrX 102719543 rs73520325 C T FALSE TRUE FALSE 35 4 39 chrX 102810157 rs73520390 C T FALSE TRUE FALSE 46 2 48 chrX 102840247 rs16983977 C T FALSE TRUE FALSE 68 2 71 chrX 102883377 rs6621713 A G TRUE FALSE FALSE 4 35 39 chrX 102883784 rs111529797 G A FALSE TRUE FALSE 29 1 32 chrX 102884659 rs73522435 G A FALSE TRUE FALSE 56 2 59 chrX 103173082 rs6621753 C T FALSE TRUE FALSE 39 2 42 chrX 103401770 rs7882194 A C TRUE FALSE FALSE 2 29 31 chrX 106045433 rs10126266 T C TRUE FALSE FALSE 1 29 30 chrX 106045557 rs10126876 A G TRUE FALSE FALSE 2 28 31 chrX 106362430 rs961375 G C FALSE TRUE FALSE 94 1 95 chrX 106362675 rs5962787 A G TRUE FALSE FALSE 1 34 36 chrX 106871085 rs1924216 T C TRUE FALSE FALSE 2 52 55 chrX 107335261 rs807182 A C FALSE TRUE FALSE 29 0 29 chrX 111296621 rs6567998 C T FALSE TRUE FALSE 32 2 34 chrX 112083671 rs73544300 G A FALSE TRUE FALSE 27 1 28 chrX 117434467 rs12392218 C G TRUE FALSE FALSE 1 44 47 chrX 117434497 rs12863977 C T FALSE TRUE FALSE 53 1 55 chrX 117479139 rs41466645 T C FALSE TRUE FALSE 32 1 34 chrX 117629292 rs1640672 T C TRUE FALSE FALSE 1 35 36 chrX 117662452 rs6646228 C T FALSE TRUE FALSE 24 0 24 chrX 118370470 rs35731236 G A FALSE TRUE FALSE 23 0 23 chrX 118740511 rs2527609 G A TRUE FALSE FALSE 1 29 30 chrX 118925482 rs12854904 G A FALSE TRUE FALSE 22 0 22 chrX 118925705 rs2240448 C T FALSE TRUE FALSE 30 0 30 chrX 118926419 rs2496204 A G FALSE TRUE FALSE 35 0 36 chrX 118926421 rs2428976 G C FALSE TRUE FALSE 32 0 32 chrX 119378587 rs73607650 T C FALSE TRUE FALSE 30 0 30 chrX 119420633 rs3810751 T C FALSE TRUE FALSE 34 1 35 chrX 119421053 rs12845457 G T FALSE TRUE FALSE 33 1 34 chrX 119620133 rs5909725 C T FALSE TRUE FALSE 31 0 31 chrX 119695624 rs2285550 A G FALSE TRUE FALSE 27 1 28 chrX 119889233 rs17332193 C A FALSE TRUE FALSE 25 1 26 chrX 119889410 rs58171364 G A FALSE TRUE FALSE 32 0 32 chrX 122992822 rs5958318 C T TRUE FALSE FALSE 0 24 24 chrX 123351626 rs10482535 T C FALSE TRUE FALSE 25 1 26 chrX 123351888 rs7050427 A G FALSE TRUE FALSE 24 0 24 chrX 130838784 rs10521772 G T FALSE TRUE FALSE 1 51 54 chrX 130875936 rs4372150 C A FALSE TRUE FALSE 1 26 27 chrX 130886628 rs57704968 G T FALSE TRUE FALSE 2 31 33 chrX 130887238 rs57530543 A C FALSE TRUE FALSE 0 51 51 chrX 130898226 rs73563947 G A FALSE TRUE FALSE 2 45 47 chrX 130937445 rs7063672 C T FALSE TRUE FALSE 1 31 32 chrX 130956219 rs34119186 G C TRUE FALSE FALSE 41 1 42 chrX 133941433 rs73568753 T C TRUE FALSE FALSE 1 42 44 chrX 135055694 rs6635201 T C FALSE TRUE FALSE 40 1 41 chrX 135862727 rs2306223 T C TRUE FALSE FALSE 3 54 57 chrX 147106155 rs6653426 T A TRUE FALSE FALSE 0 22 22 chrX 148594062 rs605115 C T FALSE TRUE FALSE 31 2 34 chrX 153755625 rs73573464 G A TRUE FALSE FALSE 1 26 28 chrX 154012121 rs5987026 T C FALSE TRUE FALSE 21 0 21 chrX 154048286 rs5987036 G T FALSE TRUE FALSE 30 2 32 chrX 154048289 rs5987037 T C FALSE TRUE FALSE 28 2 30 chrX 154057454 rs5945249 T C TRUE FALSE FALSE 0 23 23 chrX 154445204 rs73569689 C T TRUE FALSE FALSE 0 21 21 chrX 154494178 rs573572 C T TRUE FALSE FALSE 2 54 57 chrX 154564529 rs73574878 T C FALSE TRUE FALSE 23 0 23 chrX 154871743 rs528286 C T FALSE TRUE FALSE 37 2 39