chr pos id ref alt mat pat unphased ref alt tot chr1 7887248 rs2859387 G A FALSE TRUE FALSE 0 25 25 chr1 101837079 rs6688602 G T TRUE FALSE TRUE 52 9 69 chr1 101839044 rs6695400 G T FALSE TRUE FALSE 29 0 29 chr1 101839230 rs2131015 G A FALSE TRUE FALSE 30 2 32 chr1 145382264 rs74119634 C T TRUE FALSE TRUE 26 0 34 chr1 145382371 rs74119635 A G TRUE FALSE TRUE 42 0 57 chr1 244488415 rs12026165 G A FALSE TRUE TRUE 2 29 32 chr1 244488432 rs12026166 G C FALSE TRUE TRUE 2 30 33 chr2 89156124 rs232231 G C FALSE TRUE FALSE 99 197 296 chr2 89156948 rs232230 C G FALSE TRUE FALSE 94 197 291 chr2 89157282 rs232229 T A FALSE TRUE FALSE 85 182 267 chr2 89159145 rs232227 C T FALSE TRUE FALSE 96 207 305 chr2 89159180 rs6547795 C T TRUE FALSE FALSE 192 88 283 chr2 89159694 rs232225 T A FALSE TRUE FALSE 79 175 255 chr2 89160235 rs10202926 C T FALSE TRUE FALSE 53 182 248 chr2 89160244 rs10203079 G A FALSE TRUE FALSE 53 191 259 chr2 89160755 rs112915083 A G TRUE FALSE FALSE 30 119 198 chr2 89161003 rs111516117 C G TRUE FALSE FALSE 27 105 175 chr2 89161008 rs111432216 G A TRUE FALSE FALSE 28 100 171 chr2 89164394 rs57740615 T C FALSE TRUE TRUE 2 53 55 chr2 89164767 rs72932512 A G TRUE FALSE FALSE 0 43 43 chr2 89165247 rs72932515 T C FALSE TRUE FALSE 2 54 56 chr2 89165285 rs115227964 T G FALSE TRUE FALSE 2 64 66 chr2 89165286 rs115100073 T C FALSE TRUE FALSE 2 66 68 chr2 89442398 rs111475512 A C TRUE FALSE FALSE 2 200 202 chr2 89442463 rs112846847 A G TRUE FALSE FALSE 3 201 204 chr2 178499240 rs11682717 C G FALSE TRUE FALSE 0 22 22 chr5 170824594 rs62383964 A G FALSE TRUE TRUE 27 1 28 chr6 10694725 rs73439094 A G TRUE FALSE FALSE 27 83 111 chr6 32441178 rs114391652 A G FALSE TRUE FALSE 60 7 67 chr6 32498067 rs113029963 T C FALSE TRUE FALSE 54 6 70 chr6 32605257 rs1047989 C A FALSE TRUE FALSE 175 86 261 chr6 32605325 rs9272434 C T FALSE TRUE FALSE 125 55 180 chr6 32607251 rs9272571 C T FALSE TRUE FALSE 22 0 22 chr6 32607325 rs9272577 G A FALSE TRUE FALSE 25 0 25 chr6 32609379 rs9272718 C T FALSE TRUE FALSE 22 0 22 chr6 32611373 rs9272981 G A FALSE TRUE FALSE 26 0 26 chr6 32611376 rs9272982 G A FALSE TRUE FALSE 28 0 28 chr6 32611414 rs115001138 G C FALSE TRUE FALSE 27 0 27 chr6 32613610 rs9273209 C T FALSE TRUE FALSE 24 0 25 chr6 32613712 rs9273215 G A FALSE TRUE FALSE 25 0 25 chr6 32613746 rs9273216 C A FALSE TRUE FALSE 33 0 34 chr6 32613817 rs9273225 A G FALSE TRUE FALSE 27 0 28 chr6 32613824 rs9273226 C T FALSE TRUE FALSE 22 0 23 chr6 32614025 rs9273241 C T FALSE TRUE FALSE 30 0 30 chr6 32614080 rs9273242 T C FALSE TRUE FALSE 26 0 26 chr6 32615366 rs17612555 G A FALSE TRUE FALSE 43 1 47 chr6 32615903 rs77770300 A G FALSE TRUE FALSE 24 0 24 chr6 32628784 rs3020628 C A FALSE TRUE FALSE 22 0 22 chr6 32634331 rs1049058 G A FALSE TRUE FALSE 69 20 99 chr6 32634350 rs1049057 T C FALSE TRUE FALSE 77 26 116 chr8 8086110 rs115776386 G T FALSE TRUE FALSE 66 14 80 chr8 66556187 rs10504389 C T FALSE TRUE FALSE 2 32 34 chr8 101730073 rs72681443 T C FALSE TRUE TRUE 26 0 26 chr11 2721568 rs11023840 T C FALSE TRUE TRUE 23 0 23 chr11 6947454 rs73397502 G A FALSE TRUE FALSE 23 0 23 chr11 62432784 rs73502133 C T TRUE FALSE FALSE 204 61 265 chr12 120729756 rs7311566 A T FALSE TRUE FALSE 402 265 667 chr13 113585629 rs6577019 G A TRUE FALSE FALSE 0 22 22 chr13 113585660 rs73572857 C T TRUE FALSE FALSE 0 22 22 chr14 22977206 rs441323 G A TRUE FALSE FALSE 44 7 51 chr14 22977211 rs413740 C G TRUE FALSE FALSE 44 7 51 chr14 106320092 rs2256346 C T FALSE TRUE FALSE 6 52 58 chr14 106320284 rs2753505 A G FALSE TRUE FALSE 8 46 54 chr14 106320953 rs116384769 T C TRUE FALSE FALSE 41 5 46 chr14 106321197 rs114079620 G A FALSE TRUE FALSE 2 33 35 chr14 106322388 rs2753506 G A FALSE TRUE FALSE 6 48 54 chr14 106327198 rs73376324 T A TRUE FALSE FALSE 62 249 331 chr14 106329342 rs114699364 C G TRUE FALSE FALSE 140 18 268 chr14 106805829 rs2015688 G A FALSE TRUE TRUE 25 0 25 chr14 106817111 rs11851016 T C FALSE TRUE TRUE 23 0 23 chr15 25200303 rs220029 G A FALSE TRUE FALSE 0 23 23 chr15 25201654 rs115648083 C T FALSE TRUE FALSE 0 29 29 chr15 45571386 rs7167146 G A FALSE TRUE TRUE 47 9 108 chr16 3493301 rs7500590 T C FALSE TRUE FALSE 25 0 25 chr17 56409696 rs112687574 G C TRUE FALSE FALSE 401 224 627 chr17 56757208 rs73329041 T C FALSE TRUE FALSE 13 128 142 chr19 22235307 rs415291 C G FALSE TRUE FALSE 1 32 33 chr19 44905740 rs73041708 G A TRUE FALSE FALSE 24 0 24 chr20 2633466 rs73576045 C T TRUE FALSE TRUE 27 83 113 chr20 29612083 rs115689837 C T TRUE FALSE TRUE 36 0 36 chr21 40758083 rs59880434 T C FALSE TRUE FALSE 0 31 31 chrX 2847133 rs3747394 A G TRUE FALSE FALSE 1 29 30 chrX 7895232 rs73461505 A G FALSE TRUE FALSE 36 4 41 chrX 14891258 rs2285490 G T FALSE TRUE FALSE 26 0 26 chrX 19361961 rs5955750 G A TRUE FALSE FALSE 0 29 29 chrX 23801593 rs3764885 A G TRUE FALSE FALSE 0 51 51 chrX 40944301 rs35884638 C G FALSE TRUE FALSE 42 5 47 chrX 47221321 rs73488198 C T TRUE FALSE FALSE 0 27 27 chrX 47341821 rs2071780 A G FALSE TRUE FALSE 22 0 22 chrX 47415857 rs5906428 A G TRUE FALSE FALSE 0 36 36 chrX 48432463 rs10156915 G A TRUE FALSE FALSE 0 24 24 chrX 48433499 rs2249583 C G TRUE FALSE FALSE 1 38 40 chrX 48433529 rs2249585 C T TRUE FALSE FALSE 1 33 35 chrX 48437018 rs235827 T C TRUE FALSE FALSE 0 28 28 chrX 48456223 rs235824 G T TRUE FALSE FALSE 0 28 28 chrX 54665735 rs5960325 T C FALSE TRUE FALSE 27 1 28 chrX 54665813 rs56170246 C T FALSE TRUE FALSE 28 0 28 chrX 70338399 rs11796153 A G TRUE FALSE FALSE 1 32 33 chrX 70401585 rs12387381 T C FALSE TRUE FALSE 29 0 29 chrX 70473948 rs58985560 T C TRUE FALSE FALSE 0 28 28 chrX 70585863 rs28382144 G A TRUE FALSE FALSE 2 53 55 chrX 71459082 rs17302362 A G TRUE FALSE FALSE 0 27 27 chrX 100646276 rs2143597 G A FALSE TRUE FALSE 66 0 66 chrX 100662903 rs3027585 C T TRUE FALSE FALSE 0 32 32 chrX 103401770 rs7882194 A C TRUE FALSE FALSE 2 62 65 chrX 117662452 rs6646228 C T FALSE TRUE FALSE 26 1 27 chrX 118370470 rs35731236 G A FALSE TRUE FALSE 28 1 29 chrX 118740511 rs2527609 G A TRUE FALSE FALSE 1 33 34 chrX 118925457 rs12857400 C T FALSE TRUE FALSE 105 2 107 chrX 118925482 rs12854904 G A FALSE TRUE FALSE 103 1 104 chrX 118925705 rs2240448 C T FALSE TRUE FALSE 97 6 104 chrX 119695624 rs2285550 A G FALSE TRUE FALSE 43 1 44 chrX 128915597 rs882431 A C FALSE TRUE FALSE 33 3 36 chrX 134654818 rs1890584 T C FALSE TRUE FALSE 46 0 46 chrX 148622539 rs41302150 C T TRUE FALSE FALSE 1 37 38 chrX 148622730 rs3747443 G A TRUE FALSE FALSE 1 37 38 chrX 148622745 rs3747442 T A TRUE FALSE FALSE 1 35 36 chrX 153626738 rs915942 G A TRUE FALSE FALSE 2 208 210 chrX 153628525 rs73569593 C T TRUE FALSE FALSE 0 29 29 chrX 153629602 rs73569595 C T FALSE TRUE FALSE 62 0 62 chrX 153630293 rs12559 C T FALSE TRUE FALSE 35 1 36 chrX 153744816 rs5986873 C T FALSE TRUE FALSE 29 1 30