chr pos id ref alt mat pat unphased ref alt tot chr1 17222336 chr1:17222336 G A TRUE FALSE FALSE 0 86 86 chr1 17231522 rs1687156 T C FALSE TRUE FALSE 198 4 203 chr1 17231646 rs74055970 G T FALSE TRUE FALSE 221 4 227 chr1 22351947 rs61778042 G T FALSE TRUE FALSE 40 2 43 chr1 104068379 chr1_104068379 T G FALSE TRUE FALSE 69 0 69 chr1 144533886 rs2938630 T C TRUE FALSE FALSE 14 69 114 chr1 144534461 rs2938633 T C FALSE TRUE FALSE 74 1 84 chr1 148241360 rs75096758 C T FALSE TRUE FALSE 72 1 74 chr1 149223922 rs76646671 G A FALSE TRUE FALSE 283 83 463 chr1 149605874 rs76534109 C A FALSE TRUE FALSE 0 130 130 chr1 149606094 chr1:149606094 T C FALSE TRUE FALSE 2 187 189 chr1 203277247 rs3795582 G C FALSE TRUE FALSE 33 0 41 chr1 224301878 chr1_224301878 G A FALSE TRUE FALSE 41 0 54 chr2 89154979 rs232234 C T TRUE FALSE FALSE 0 25 25 chr2 89155047 rs232233 T G TRUE FALSE FALSE 0 27 27 chr2 89155322 rs62158751 G A TRUE FALSE FALSE 0 23 23 chr2 89155489 rs232232 G A TRUE FALSE FALSE 0 31 31 chr2 179315757 rs9406386 T G TRUE FALSE FALSE 44 0 58 chr2 179315781 rs62176113 C T TRUE FALSE FALSE 38 0 52 chr2 179315890 chr2:179315890 G C TRUE FALSE FALSE 30 0 47 chr2 201676441 rs2270282 G A TRUE FALSE FALSE 4 38 68 chr2 208031263 rs35054436 G C FALSE TRUE FALSE 3 39 42 chr3 46600214 rs117435589 G A FALSE TRUE FALSE 0 28 28 chr3 48956342 chr3_48956342 G C FALSE TRUE FALSE 26 0 26 chr3 69129493 chr3_69129493 G C FALSE TRUE FALSE 34 0 34 chr3 125709366 rs35120077 G A TRUE FALSE FALSE 31 0 31 chr3 125709554 rs6803160 G T FALSE TRUE FALSE 0 29 29 chr3 195717304 rs185783701 C G FALSE TRUE FALSE 34 0 34 chr4 6675392 rs4689029 T C TRUE FALSE FALSE 47 1 48 chr4 6675421 rs3178461 C T TRUE FALSE FALSE 39 4 43 chr4 17812750 chr4_17812750 C G FALSE TRUE FALSE 24 0 24 chr4 44728638 chr4_44728638 C G FALSE TRUE FALSE 34 4 38 chr4 48272180 chr4_48272180 G C FALSE TRUE FALSE 28 0 36 chr4 190861695 rs114347369 A G FALSE TRUE FALSE 29 0 30 chr4 190861738 rs72722533 G A FALSE TRUE FALSE 39 0 39 chr4 190861751 rs75501246 G A FALSE TRUE FALSE 37 0 37 chr5 139487300 chr5_139487300 C G FALSE TRUE FALSE 40 0 40 chr6 291258 rs9328093 G C TRUE FALSE FALSE 0 24 24 chr6 291744 rs9942546 G C TRUE FALSE FALSE 32 3 35 chr6 292833 rs815596 G A TRUE FALSE FALSE 82 1 83 chr6 293332 rs7767281 G T TRUE FALSE FALSE 45 0 45 chr6 26104057 rs198854 T C TRUE FALSE FALSE 10 64 76 chr6 32441150 rs150272783 C T TRUE FALSE FALSE 44 4 49 chr6 32441178 rs114391652 A G TRUE FALSE FALSE 46 6 53 chr6 32441193 rs9269083 A G TRUE FALSE FALSE 48 6 55 chr6 32441199 rs116822583 A G TRUE FALSE FALSE 49 6 56 chr6 32441202 rs9269085 C G TRUE FALSE FALSE 47 6 54 chr6 32441268 rs114569551 G A TRUE FALSE FALSE 66 6 74 chr6 32441276 rs117580924 C T TRUE FALSE FALSE 64 7 73 chr6 32498126 rs62405578 T G FALSE TRUE FALSE 42 4 49 chr6 32498134 rs113888484 C A TRUE FALSE FALSE 42 4 48 chr6 32557504 rs17879020 G A FALSE TRUE FALSE 103 19 137 chr6 32627561 rs9273440 T C TRUE FALSE FALSE 32 3 36 chr6 32634736 rs9274546 C T TRUE FALSE FALSE 39 0 41 chr6 32634763 rs9274547 A T TRUE FALSE FALSE 37 0 38 chr6 32634765 rs41316204 T C FALSE TRUE FALSE 40 0 40 chr6 32634834 rs9274551 C T TRUE FALSE FALSE 30 0 30 chr6 32634838 rs9274552 A C TRUE FALSE FALSE 29 0 29 chr6 168216611 rs485471 C G FALSE TRUE FALSE 0 26 26 chr7 26241065 chr7_26241065 G C FALSE TRUE FALSE 24 0 24 chr7 77166267 chr7_77166267 T C FALSE TRUE FALSE 38 4 42 chr7 100487733 chr7_100487733 G C FALSE TRUE FALSE 37 0 37 chr8 2075378 rs4876220 C T TRUE FALSE FALSE 46 0 48 chr8 2591021 rs6982752 C T TRUE FALSE FALSE 22 0 22 chr8 2591463 rs11136539 G C TRUE FALSE FALSE 34 0 34 chr9 66455821 rs72510904 A G FALSE TRUE FALSE 38 0 38 chr10 99178747 rs11189212 T G FALSE TRUE FALSE 0 36 36 chr10 103124605 rs10786631 G A TRUE FALSE FALSE 76 0 92 chr10 112064573 chr10_112064573 T G FALSE TRUE FALSE 22 0 22 chr12 56497893 chr12_56497893 C G FALSE TRUE FALSE 36 1 57 chr13 46786073 chr13_46786073 C G FALSE TRUE FALSE 27 0 27 chr14 24563527 chr14_24563527 G C FALSE TRUE FALSE 53 0 54 chr14 81636767 chr14_81636767 T G FALSE TRUE FALSE 43 2 45 chr14 93799555 chr14_93799555 C T FALSE TRUE FALSE 41 0 44 chr14 93799587 rs11628949 C T FALSE TRUE FALSE 40 0 43 chr14 106134510 rs10144438 G C FALSE TRUE FALSE 68 0 68 chr14 106203759 rs12434455 G C TRUE FALSE FALSE 0 28 28 chr14 106203762 rs12434456 G C TRUE FALSE FALSE 0 29 30 chr14 106206603 rs4774023 A G FALSE TRUE FALSE 0 23 24 chr14 106206606 rs10149890 A G FALSE TRUE FALSE 0 23 24 chr14 106316381 rs2753501 G T TRUE FALSE FALSE 31 0 31 chr14 106317994 rs2180790 T G TRUE FALSE FALSE 29 0 29 chr14 106318342 rs2256593 T C TRUE FALSE FALSE 33 0 33 chr14 106318440 rs2256589 T C TRUE FALSE FALSE 29 0 29 chr14 106318450 rs2753504 G A TRUE FALSE FALSE 31 0 31 chr14 106320092 rs2256346 C T TRUE FALSE FALSE 33 0 33 chr14 106321146 rs10287 A G FALSE TRUE FALSE 0 22 22 chr14 106321308 chr14:106321308 G A FALSE TRUE FALSE 0 26 26 chr14 106321371 rs61498434 G A FALSE TRUE FALSE 0 25 25 chr14 106321989 rs112590707 G A FALSE TRUE FALSE 0 27 27 chr14 106322093 chr14:106322093 G C FALSE TRUE FALSE 0 30 30 chr14 106322498 rs60859470 G A FALSE TRUE FALSE 1 26 27 chr14 106322528 rs57521546 T C FALSE TRUE FALSE 0 31 31 chr14 106322593 rs57048242 A G FALSE TRUE FALSE 0 22 22 chr14 106325776 chr14_106325776 A G FALSE TRUE FALSE 34 0 34 chr14 106328286 rs115018921 T A FALSE TRUE FALSE 127 48 175 chr14 106328292 rs114417193 A G FALSE TRUE FALSE 125 49 174 chr14 106328376 rs76697756 G A FALSE TRUE FALSE 125 39 164 chr14 106328948 chr14:106328948 C A FALSE TRUE FALSE 111 32 143 chr14 106329150 chr14:106329150 A T FALSE TRUE FALSE 101 23 124 chr14 106329206 chr14:106329206 C T FALSE TRUE FALSE 91 26 117 chr14 106329287 rs13379369 G A FALSE TRUE FALSE 84 25 109 chr14 106329326 rs74750044 T C FALSE TRUE FALSE 90 27 117 chr14 106329435 rs1950943 T G TRUE FALSE FALSE 22 77 101 chr14 106329919 rs3752943 G A TRUE FALSE FALSE 80 19 99 chr14 106330126 rs3752945 C A TRUE FALSE FALSE 69 19 89 chr14 106347783 rs2753520 A T TRUE FALSE FALSE 31 0 31 chr14 106347864 rs2516983 C T TRUE FALSE FALSE 45 0 45 chr14 106347872 rs2857371 T A TRUE FALSE FALSE 51 0 51 chr14 106348172 rs2753521 C A FALSE TRUE FALSE 0 36 36 chr14 106349932 rs12587150 A C FALSE TRUE FALSE 0 23 23 chr14 106518565 rs113460079 C T TRUE FALSE FALSE 78 0 79 chr14 106518738 rs112149134 C A TRUE FALSE FALSE 155 0 155 chr14 106518848 rs2073679 T C TRUE FALSE FALSE 268 0 268 chr14 106518930 rs112920599 C T TRUE FALSE FALSE 401 0 401 chr14 106519178 rs112626254 G T TRUE FALSE FALSE 267 0 267 chr14 106519519 rs113932117 A C TRUE FALSE FALSE 133 0 133 chr14 106519677 rs111489715 G C TRUE FALSE FALSE 94 1 95 chr14 106519819 rs989085 C G TRUE FALSE FALSE 51 0 51 chr14 106519990 chr14:106519990 T C TRUE FALSE FALSE 22 0 22 chr15 60771385 rs77762443 C G FALSE TRUE FALSE 75 0 83 chr15 90777640 chr15_90777640 G A FALSE TRUE FALSE 51 0 51 chr16 29973472 chr16_29973472 C G FALSE TRUE FALSE 31 0 31 chr16 46824106 chr16_46824106 T G FALSE TRUE FALSE 32 0 32 chr16 89724505 chr16_89724505 C G FALSE TRUE FALSE 31 0 31 chr17 4852927 chr17_4852927 C G FALSE TRUE FALSE 26 1 27 chr17 20435422 chr17:20435422 C G TRUE FALSE FALSE 1 31 32 chr17 21226222 rs12325747 C A TRUE FALSE FALSE 28 0 28 chr17 21226240 rs75530950 C T TRUE FALSE FALSE 30 0 31 chr17 21226255 rs12325903 A G TRUE FALSE FALSE 34 0 36 chr17 21226381 rs12325906 A G TRUE FALSE FALSE 41 0 42 chr17 21226385 rs76099074 A G TRUE FALSE FALSE 44 0 45 chr17 27052368 chr17_27052368 C T FALSE TRUE FALSE 37 0 37 chr17 30669055 rs116565498 C G FALSE TRUE FALSE 34 0 34 chr17 41393260 rs35312672 G A TRUE FALSE FALSE 334 215 550 chr17 41393265 rs75467880 T C TRUE FALSE FALSE 341 222 563 chr17 41393275 rs2171462 C A TRUE FALSE FALSE 343 223 567 chr17 41393396 chr17:41393396 G T TRUE FALSE FALSE 236 99 337 chr17 41393438 rs1386749 G A TRUE FALSE FALSE 224 74 301 chr17 41393440 rs113613557 T C TRUE FALSE FALSE 221 74 298 chr17 65990027 rs188054477 C G FALSE TRUE FALSE 29 0 29 chr19 2478550 rs78647407 T G FALSE TRUE FALSE 29 0 29 chr20 29611903 chr20:29611903 C T FALSE TRUE FALSE 22 0 25 chr20 29611905 rs73117315 G A FALSE TRUE FALSE 22 0 25 chr20 29612064 rs75830933 A T FALSE TRUE FALSE 25 0 26 chr20 29612076 chr20:29612076 G C FALSE TRUE FALSE 24 0 24 chr21 48055250 chr21_48055250 C A FALSE TRUE FALSE 22 0 22 chr22 22712276 rs5757971 A G TRUE FALSE FALSE 0 108 108 chr22 23242096 rs62218848 T C FALSE TRUE FALSE 0 31 31 chr22 23242127 rs442989 A T FALSE TRUE FALSE 0 23 23 chr22 23244310 rs364790 A G TRUE FALSE FALSE 0 39 39 chr22 23248839 rs7117 A T TRUE FALSE FALSE 0 57 57 chr22 23249040 rs2854095 T C TRUE FALSE FALSE 1 87 89 chr22 23249354 rs2519501 C T TRUE FALSE FALSE 1 52 53 chr22 23249390 rs2856875 A G TRUE FALSE FALSE 0 58 58 chr22 36903057 chr22_36903057 T C FALSE TRUE FALSE 34 0 34 chr22 42977870 chr22_42977870 G C FALSE TRUE FALSE 32 0 32 chr22 51066860 chr22_51066860 G C FALSE TRUE FALSE 24 0 24 chrX 155111077 rs28413172 C T TRUE FALSE FALSE 0 42 42